#62: 2prev

mikessh · Feb 15, 2017 · 579176d · 579176d
1 parent 08716af
commit 579176d
Showing 1 changed file with 5 additions and 1 deletion.
diff --git a/src/main/groovy/com/antigenomics/vdjtools/io/parser/ClonotypeStreamParser.groovy b/src/main/groovy/com/antigenomics/vdjtools/io/parser/ClonotypeStreamParser.groovy
@@ -149,6 +149,10 @@ public abstract class ClonotypeStreamParser implements Iterable<Clonotype> {
                 return null
             }
 
+            if (clonotypeString.trim().empty) {
+                return null // ignore blank lines
+            }
+
             totalLines++
 
             def clonotype = innerParse(clonotypeString)
@@ -182,7 +186,7 @@ public abstract class ClonotypeStreamParser implements Iterable<Clonotype> {
             return clonotype
         } catch (Exception e) {
             throw new RuntimeException("Unable to parse clonotype string $clonotypeString " +
-                    "for $software input type.", e)
+                    "for $software input type: ${e.message}", e)
         }
     }