Skip to content

Latest commit

 

History

History
49 lines (45 loc) · 2.55 KB

Todo.md

File metadata and controls

49 lines (45 loc) · 2.55 KB

Summary

program Tour Overview Fx
MutantCaller results is poor ✓ Some fx tweaks
Mutanalyst ✓ ✓ ✓
Pedel classic ✕ ? Minor
Pedel AA Incomplete ✓ More...
Driver ✓ ✓ table?
Glue ✕ ✓ extra?
GlueIT ✕ ✓ extra?
QQC ✕ ✓ reverse strand
Deepscan ✕ ✓ ✓
Mutantprimer ✓ ✕ ✓
Landscape ✕ ✓ ✓
Silico ✕ ✕ Demo
Probably ✕ ✕ ✓

To Do list

Sorted by urgency:

  • upcoming status 500.
  • citations route temporarily
  • bootstrap switch --> reg switch
  • Pedel-AA a-elements linkage is broken in certain bits. 😠
  • Pedel range of conditions not done yet, but pedel_batch wrapper made. —original functionality
  • Pedel-AA graphs —original functionality
  • PedelAA links to modals in sub table. — I thought this was done. 😕
  • QQC wire reverse
  • Glue works, but make it print a graph at different values. —extra functionality
  • driver output could be made into a nice table actually. —extra functionality
  • mutationprimer why is Y66 actually Y67? Does GFP not start from ATG??
  • mutationprimer IDT does not accept lowercase degenrte nts.
  • mutatcaller does not check for terminal indels if set to local. Currently set to global.
  • mutatcaller silent mutations! Also ratio of these!
  • mutatcaller input penalty values for match returns mutations. what the hell does this mean?
  • Scheme 19c and 20c in QQC are incomplete!!
  • js of misc for codon has error due to staticmethod being called... changed the static methods fom QQC.
  • GlueIT in pt needs js to change the number of codons.
  • Glue needs a switch like Pedel —or does Pedel need two pages?
  • URL query string needs to be integrated
  • make size responsive. —why would anyone use their mobile?
  • Make sure code supports badly formatted sequences. e.g. numbers and spaces and newlines.
  • Also edit js side to catch client side errors. —Some do already...
  • Rosetta landscape. Add distribution of mutations and norm thinggy like my matlab script has.
  • Mutanalyst is using old JS still. Not Ajax and python. —Is this actually urgent??
  • mutationprimer. temporary name. Most functions are copypaste jobs of deepscan. —So?
  • mutationprimer code currently written until making a function in mutant_wrapper... —what does this mean?