diff --git a/docs/404.html b/docs/404.html index b9991bca..9e891ba9 100644 --- a/docs/404.html +++ b/docs/404.html @@ -39,7 +39,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/CONTRIBUTING.html b/docs/CONTRIBUTING.html index e28a05e6..9abebaab 100644 --- a/docs/CONTRIBUTING.html +++ b/docs/CONTRIBUTING.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html index 7c4efc1a..101d33d8 100644 --- a/docs/LICENSE-text.html +++ b/docs/LICENSE-text.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/articles/abfit-baseline-opts.html b/docs/articles/abfit-baseline-opts.html index e886e8d6..05a7a3a4 100644 --- a/docs/articles/abfit-baseline-opts.html +++ b/docs/articles/abfit-baseline-opts.html @@ -40,7 +40,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/articles/index.html b/docs/articles/index.html index 28344296..52554243 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/articles/spant-basis-simulation.html b/docs/articles/spant-basis-simulation.html index aeaa3f02..261469dc 100644 --- a/docs/articles/spant-basis-simulation.html +++ b/docs/articles/spant-basis-simulation.html @@ -40,7 +40,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/articles/spant-intro.html b/docs/articles/spant-intro.html index 2bd0b819..cb1b3391 100644 --- a/docs/articles/spant-intro.html +++ b/docs/articles/spant-intro.html @@ -40,7 +40,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -194,56 +194,58 @@

Basis simulation 
 fit_res$res_tab
-#>   X Y Z Dynamic Coil X.CrCH2         Ala          Asp          Cr         GABA
-#> 1 1 1 1       1    1       0 8.22895e-06 3.548331e-05 4.02031e-05 1.706756e-05
-#>            Glc          Gln          GSH          Glu         GPC          Ins
-#> 1 2.442204e-06 3.029796e-06 2.227788e-05 6.499653e-05 1.60329e-05 5.902972e-05
-#>           Lac        Lip09       Lip13a Lip13b Lip20         MM09         MM12
-#> 1 5.81872e-06 2.362969e-05 2.635534e-06      0     0 9.887589e-06 6.546986e-06
-#>           MM14        MM17         MM20          NAA         NAAG PCh
-#> 1 2.599939e-05 2.24551e-05 9.207425e-05 5.981785e-05 1.556186e-05   0
-#>           PCr         sIns Tau        tNAA        tCr        tCho          Glx
-#> 1 2.10129e-05 6.508656e-06   0 7.53797e-05 6.1216e-05 1.60329e-05 6.802632e-05
-#>          tLM09        tLM13        tLM20   X.CrCH2.sd       Ala.sd       Asp.sd
-#> 1 3.351728e-05 3.518191e-05 9.207425e-05 2.383752e-06 4.353308e-06 9.243631e-06
-#>          Cr.sd      GABA.sd       Glc.sd       Gln.sd       GSH.sd       Glu.sd
-#> 1 3.715168e-06 4.580094e-06 4.427049e-06 5.089146e-06 2.022837e-06 5.086891e-06
-#>         GPC.sd       Ins.sd       Lac.sd     Lip09.sd    Lip13a.sd    Lip13b.sd
-#> 1 2.525935e-06 2.091042e-06 5.311857e-06 4.118788e-06 1.328563e-05 6.477228e-06
-#>       Lip20.sd      MM09.sd      MM12.sd      MM14.sd     MM17.sd      MM20.sd
-#> 1 7.510919e-06 3.827223e-06 4.597885e-06 7.234432e-06 3.81027e-06 8.602468e-06
-#>         NAA.sd      NAAG.sd       PCh.sd      PCr.sd      sIns.sd       Tau.sd
-#> 1 1.015226e-06 1.215671e-06 2.174694e-06 3.10803e-06 7.233859e-07 3.777987e-06
-#>        tNAA.sd       tCr.sd      tCho.sd       Glx.sd     tLM09.sd     tLM13.sd
-#> 1 7.031061e-07 5.881707e-07 2.113501e-07 3.165047e-06 1.006533e-06 1.572004e-06
-#>      tLM20.sd    phase       lw        shift      asym res.deviance res.niter
-#> 1 3.01819e-06 11.15083 5.038936 -0.003427611 0.1764494 7.300326e-05        28
-#>   res.info                                                      res.message
-#> 1        2 Relative error between `par' and the solution is at most `ptol'.
-#>   bl_ed_pppm max_bl_flex_used     full_res fit_pts ppm_range      SNR      SRR
-#> 1   2.364083            FALSE 7.745307e-05     497       3.8 62.79192 51.44065
-#>        FQN   tNAA_lw     tCr_lw    tCho_lw auto_bl_crit_7 auto_bl_crit_5.901
-#> 1 1.490028 0.0456527 0.05199591 0.05438811      -8.904402          -8.947808
+#>   X Y Z Dynamic Coil X.CrCH2          Ala          Asp           Cr
+#> 1 1 1 1       1    1       0 8.228927e-06 3.548334e-05 4.020308e-05
+#>           GABA          Glc         Gln          GSH          Glu          GPC
+#> 1 1.706755e-05 2.442129e-06 3.02975e-06 2.227787e-05 6.499648e-05 1.603289e-05
+#>            Ins          Lac        Lip09       Lip13a Lip13b Lip20         MM09
+#> 1 5.902963e-05 5.818731e-06 2.362971e-05 2.635515e-06      0     0 9.887568e-06
+#>           MM12         MM14         MM17        MM20          NAA         NAAG
+#> 1 6.546985e-06 2.599939e-05 2.245508e-05 9.20742e-05 5.981786e-05 1.556187e-05
+#>   PCh          PCr         sIns Tau         tNAA          tCr         tCho
+#> 1   0 2.101294e-05 6.508645e-06   0 7.537973e-05 6.121601e-05 1.603289e-05
+#>            Glx        tLM09       tLM13       tLM20   X.CrCH2.sd       Ala.sd
+#> 1 6.802623e-05 3.351728e-05 3.51819e-05 9.20742e-05 2.383751e-06 4.353307e-06
+#>         Asp.sd        Cr.sd      GABA.sd       Glc.sd       Gln.sd       GSH.sd
+#> 1 9.243628e-06 3.715173e-06 4.580085e-06 4.427047e-06 5.089144e-06 2.022837e-06
+#>         Glu.sd       GPC.sd      Ins.sd       Lac.sd     Lip09.sd    Lip13a.sd
+#> 1 5.086889e-06 2.525935e-06 2.09104e-06 5.311856e-06 4.118787e-06 1.328562e-05
+#>      Lip13b.sd     Lip20.sd      MM09.sd      MM12.sd     MM14.sd      MM17.sd
+#> 1 6.477226e-06 7.510917e-06 3.827222e-06 4.597884e-06 7.23443e-06 3.810268e-06
+#>        MM20.sd       NAA.sd      NAAG.sd       PCh.sd       PCr.sd      sIns.sd
+#> 1 8.602466e-06 1.015226e-06 1.215672e-06 2.174695e-06 3.108034e-06 7.233857e-07
+#>         Tau.sd     tNAA.sd       tCr.sd    tCho.sd       Glx.sd     tLM09.sd
+#> 1 3.777985e-06 7.03106e-07 5.881706e-07 2.1135e-07 3.165046e-06 1.006532e-06
+#>       tLM13.sd     tLM20.sd    phase       lw        shift      asym
+#> 1 1.572003e-06 3.018189e-06 11.15086 5.038937 -0.003427612 0.1764496
+#>   res.deviance res.niter res.info
+#> 1  7.30032e-05        28        2
+#>                                                        res.message bl_ed_pppm
+#> 1 Relative error between `par' and the solution is at most `ptol'.   2.364083
+#>   max_bl_flex_used     full_res fit_pts ppm_range      SNR      SRR      FQN
+#> 1            FALSE 7.745304e-05     497       3.8 62.79191 51.44067 1.490027
+#>     tNAA_lw     tCr_lw    tCho_lw auto_bl_crit_7 auto_bl_crit_5.901
+#> 1 0.0456527 0.05199591 0.05438809      -8.904402          -8.947808
 #>   auto_bl_crit_4.942 auto_bl_crit_4.12 auto_bl_crit_3.425 auto_bl_crit_2.844
-#> 1          -8.980941         -9.003463          -9.016574          -9.023968
+#> 1          -8.980941         -9.003463          -9.016574          -9.023969
 #>   auto_bl_crit_2.364 auto_bl_crit_1.969 auto_bl_crit_1.647 auto_bl_crit_1.384
 #> 1          -9.027876          -9.027565          -9.014311          -8.963288
 #>   auto_bl_crit_1.17 auto_bl_crit_0.997 auto_bl_crit_0.856 auto_bl_crit_0.743
-#> 1          -8.84875          -8.694789          -8.565998          -8.488423
+#> 1         -8.848749          -8.694787          -8.565995           -8.48842
 #>   auto_bl_crit_0.654 auto_bl_crit_0.593 auto_bl_crit_0.558 auto_bl_crit_0.54
-#> 1          -8.449882          -8.432822          -8.425656         -8.422669
+#> 1          -8.449879          -8.432819          -8.425653         -8.422666
 #>   auto_bl_crit_0.532 auto_bl_crit_0.529
-#> 1          -8.421414          -8.420883
+#> 1 -8.421411 -8.42088

Note that signal names appended with “.sd” are the CRLB estimates for the uncertainty (standard deviation) in the metabolite quantity estimate. e.g. to calculate the percentage s.d. for tNAA:

 fit_res$res_tab$tNAA.sd / fit_res$res_tab$tNAA * 100
-#> [1] 0.9327525
+#> [1] 0.932752

Spectral SNR:

 fit_res$res_tab$SNR
-#> [1] 62.79192
+#> [1] 62.79191

Linewidth of the tNAA resonance in PPM:

 fit_res$res_tab$tNAA_lw
@@ -262,39 +264,39 @@ 
Ratios to total-creatineprint(t(amps))
 #>               [,1]
 #> X.CrCH2 0.00000000
-#> Ala     0.13442483
-#> Asp     0.57964105
-#> Cr      0.65674172
-#> GABA    0.27880886
-#> Glc     0.03989487
-#> Gln     0.04949353
-#> GSH     0.36392249
-#> Glu     1.06175719
-#> GPC     0.26190699
-#> Ins     0.96428574
-#> Lac     0.09505227
-#> Lip09   0.38600521
-#> Lip13a  0.04305302
+#> Ala     0.13442442
+#> Asp     0.57964149
+#> Cr      0.65674116
+#> GABA    0.27880851
+#> Glc     0.03989363
+#> Gln     0.04949277
+#> GSH     0.36392222
+#> Glu     1.06175609
+#> GPC     0.26190682
+#> Ins     0.96428418
+#> Lac     0.09505243
+#> Lip09   0.38600544
+#> Lip13a  0.04305271
 #> Lip13b  0.00000000
 #> Lip20   0.00000000
-#> MM09    0.16151968
-#> MM12    0.10694893
-#> MM14    0.42471564
-#> MM17    0.36681750
-#> MM20    1.50408802
+#> MM09    0.16151931
+#> MM12    0.10694890
+#> MM14    0.42471558
+#> MM17    0.36681706
+#> MM20    1.50408687
 #> NAA     0.97716035
-#> NAAG    0.25421222
+#> NAAG    0.25421241
 #> PCh     0.00000000
-#> PCr     0.34325828
-#> sIns    0.10632279
+#> PCr     0.34325884
+#> sIns    0.10632259
 #> Tau     0.00000000
-#> tNAA    1.23137257
+#> tNAA    1.23137276
 #> tCr     1.00000000
-#> tCho    0.26190699
-#> Glx     1.11125073
-#> tLM09   0.54752489
-#> tLM13   0.57471759
-#> tLM20   1.50408802
+#> tCho 0.26190682 +#> Glx 1.11124886 +#> tLM09 0.54752475 +#> tLM13 0.57471719 +#> tLM20 1.50408687

Water reference scaling, AKA “absolute-quantification” @@ -324,7 +326,7 @@

Water reference sca 
 fit_res_molar <- scale_amp_molar(fit_res, mrs_data_wref)
 fit_res_molar$res_tab$tNAA
-#> [1] 6.81759
+#> [1] 6.817592

Note, while “absolute” units are attractive, a large number of assumptions about metabolite and water relaxation rates are necessary to arrive at these mM estimates. If you’re not confident at being able to diff --git a/docs/articles/spant-intro_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/spant-intro_files/figure-html/unnamed-chunk-10-1.png index 19eb7c62..09efb37a 100644 Binary files a/docs/articles/spant-intro_files/figure-html/unnamed-chunk-10-1.png and b/docs/articles/spant-intro_files/figure-html/unnamed-chunk-10-1.png differ diff --git a/docs/articles/spant-intro_files/figure-html/unnamed-chunk-7-1.png b/docs/articles/spant-intro_files/figure-html/unnamed-chunk-7-1.png index de9e68c3..6dfa620c 100644 Binary files a/docs/articles/spant-intro_files/figure-html/unnamed-chunk-7-1.png and b/docs/articles/spant-intro_files/figure-html/unnamed-chunk-7-1.png differ diff --git a/docs/articles/spant-metabolite-simulation.html b/docs/articles/spant-metabolite-simulation.html index bee38e7d..866d162f 100644 --- a/docs/articles/spant-metabolite-simulation.html +++ b/docs/articles/spant-metabolite-simulation.html @@ -40,7 +40,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/articles/spant-preprocessing.html b/docs/articles/spant-preprocessing.html index c3c48039..33b16085 100644 --- a/docs/articles/spant-preprocessing.html +++ b/docs/articles/spant-preprocessing.html @@ -40,7 +40,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-10-1.png b/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-10-1.png index 72b4c1f7..4f14b685 100644 Binary files a/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-10-1.png and b/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-10-1.png differ diff --git a/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-8-1.png b/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-8-1.png index 9e1f34ae..bc4b4f86 100644 Binary files a/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-8-1.png and b/docs/articles/spant-preprocessing_files/figure-html/unnamed-chunk-8-1.png differ diff --git a/docs/authors.html b/docs/authors.html index b820bfcd..3c0b041e 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/index.html b/docs/index.html index 7ab51dea..61c05bf5 100644 --- a/docs/index.html +++ b/docs/index.html @@ -43,7 +43,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/news/index.html b/docs/news/index.html index 2c271221..b1908ab8 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -73,7 +73,14 @@

Changelog

-

spant 2.17.0

+

spant 2.18.0

+
+
+

spant 2.17.02023-11-28

diff --git a/docs/reference/Conj.mrs_data.html b/docs/reference/Conj.mrs_data.html index 2f534484..b409f725 100644 --- a/docs/reference/Conj.mrs_data.html +++ b/docs/reference/Conj.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Im.mrs_data.html b/docs/reference/Im.mrs_data.html index d3f05f46..50408aae 100644 --- a/docs/reference/Im.mrs_data.html +++ b/docs/reference/Im.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Imzap.html b/docs/reference/Imzap.html index 0106fb0d..d894c8cc 100644 --- a/docs/reference/Imzap.html +++ b/docs/reference/Imzap.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Mod.mrs_data.html b/docs/reference/Mod.mrs_data.html index deebb052..2f9df4eb 100644 --- a/docs/reference/Mod.mrs_data.html +++ b/docs/reference/Mod.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Ncoils.html b/docs/reference/Ncoils.html index 32c06f2f..6f3d4792 100644 --- a/docs/reference/Ncoils.html +++ b/docs/reference/Ncoils.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Ndyns.html b/docs/reference/Ndyns.html index 625cc7ca..83ab9f10 100644 --- a/docs/reference/Ndyns.html +++ b/docs/reference/Ndyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Npts.html b/docs/reference/Npts.html index 4f3b4bf1..4e7c2ee2 100644 --- a/docs/reference/Npts.html +++ b/docs/reference/Npts.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Nspec.html b/docs/reference/Nspec.html index 6394903b..3f499499 100644 --- a/docs/reference/Nspec.html +++ b/docs/reference/Nspec.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Ntrans.html b/docs/reference/Ntrans.html index 39073fe5..3c05206d 100644 --- a/docs/reference/Ntrans.html +++ b/docs/reference/Ntrans.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Nx.html b/docs/reference/Nx.html index 04dd61e7..6aff20a4 100644 --- a/docs/reference/Nx.html +++ b/docs/reference/Nx.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Ny.html b/docs/reference/Ny.html index c71c665e..1d6d1f11 100644 --- a/docs/reference/Ny.html +++ b/docs/reference/Ny.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/Nz.html b/docs/reference/Nz.html index fee8b401..6f849223 100644 --- a/docs/reference/Nz.html +++ b/docs/reference/Nz.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/Re.mrs_data.html b/docs/reference/Re.mrs_data.html index 25b4188c..ae74c3fa 100644 --- a/docs/reference/Re.mrs_data.html +++ b/docs/reference/Re.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/abfit_opts.html b/docs/reference/abfit_opts.html index 52c3fd0e..2eb785ea 100644 --- a/docs/reference/abfit_opts.html +++ b/docs/reference/abfit_opts.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/abfit_opts_v1_9_0.html b/docs/reference/abfit_opts_v1_9_0.html index 853139d6..ac726a20 100644 --- a/docs/reference/abfit_opts_v1_9_0.html +++ b/docs/reference/abfit_opts_v1_9_0.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/acquire.html b/docs/reference/acquire.html index 45ee5114..6b3afec8 100644 --- a/docs/reference/acquire.html +++ b/docs/reference/acquire.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/add_noise.html b/docs/reference/add_noise.html index 67b96120..1466dae3 100644 --- a/docs/reference/add_noise.html +++ b/docs/reference/add_noise.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/align.html b/docs/reference/align.html index 10a9968a..f8cc549d 100644 --- a/docs/reference/align.html +++ b/docs/reference/align.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/apodise_xy.html b/docs/reference/apodise_xy.html index 5b3f3547..6aa22aae 100644 --- a/docs/reference/apodise_xy.html +++ b/docs/reference/apodise_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/append_basis.html b/docs/reference/append_basis.html index 57ff30b7..7bfaba52 100644 --- a/docs/reference/append_basis.html +++ b/docs/reference/append_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/append_coils.html b/docs/reference/append_coils.html index 34d24de7..48a9f8c7 100644 --- a/docs/reference/append_coils.html +++ b/docs/reference/append_coils.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/append_dyns.html b/docs/reference/append_dyns.html index a7baf537..3c3c5664 100644 --- a/docs/reference/append_dyns.html +++ b/docs/reference/append_dyns.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/apply_axes.html b/docs/reference/apply_axes.html index 9f72332b..6ee9420c 100644 --- a/docs/reference/apply_axes.html +++ b/docs/reference/apply_axes.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/apply_mrs.html b/docs/reference/apply_mrs.html index 6cae04b5..8f81772d 100644 --- a/docs/reference/apply_mrs.html +++ b/docs/reference/apply_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/apply_pulse.html b/docs/reference/apply_pulse.html index f04b48e4..e892220c 100644 --- a/docs/reference/apply_pulse.html +++ b/docs/reference/apply_pulse.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/array2mrs_data.html b/docs/reference/array2mrs_data.html index f0e0b89c..6ce78f87 100644 --- a/docs/reference/array2mrs_data.html +++ b/docs/reference/array2mrs_data.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/auto_phase.html b/docs/reference/auto_phase.html index 82f1cdf0..2788b810 100644 --- a/docs/reference/auto_phase.html +++ b/docs/reference/auto_phase.html @@ -23,7 +23,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/back_extrap_ar.html b/docs/reference/back_extrap_ar.html index bb7cd0a1..62a3ef23 100644 --- a/docs/reference/back_extrap_ar.html +++ b/docs/reference/back_extrap_ar.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/basis2mrs_data.html b/docs/reference/basis2mrs_data.html index 245295f0..dce93215 100644 --- a/docs/reference/basis2mrs_data.html +++ b/docs/reference/basis2mrs_data.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/bbase.html b/docs/reference/bbase.html index c2ad3462..9f02781b 100644 --- a/docs/reference/bbase.html +++ b/docs/reference/bbase.html @@ -19,7 +19,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/bc_als.html b/docs/reference/bc_als.html index da6879f8..8bac9cd0 100644 --- a/docs/reference/bc_als.html +++ b/docs/reference/bc_als.html @@ -18,7 +18,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/bc_constant.html b/docs/reference/bc_constant.html index 411fdbae..ea86b1e2 100644 --- a/docs/reference/bc_constant.html +++ b/docs/reference/bc_constant.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/bc_gauss.html b/docs/reference/bc_gauss.html index 9c1a9b7f..9fd547a3 100644 --- a/docs/reference/bc_gauss.html +++ b/docs/reference/bc_gauss.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/bc_poly.html b/docs/reference/bc_poly.html index 7350d0b6..d1bbac1a 100644 --- a/docs/reference/bc_poly.html +++ b/docs/reference/bc_poly.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/bc_spline.html b/docs/reference/bc_spline.html index 8491ff1e..2263f341 100644 --- a/docs/reference/bc_spline.html +++ b/docs/reference/bc_spline.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/beta2lw.html b/docs/reference/beta2lw.html index 5d88ccd6..b7fac290 100644 --- a/docs/reference/beta2lw.html +++ b/docs/reference/beta2lw.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/bin_spec.html b/docs/reference/bin_spec.html index 375c4d66..beee5e12 100644 --- a/docs/reference/bin_spec.html +++ b/docs/reference/bin_spec.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/calc_coil_noise_cor.html b/docs/reference/calc_coil_noise_cor.html index 88fa8665..43d164aa 100644 --- a/docs/reference/calc_coil_noise_cor.html +++ b/docs/reference/calc_coil_noise_cor.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/calc_coil_noise_sd.html b/docs/reference/calc_coil_noise_sd.html index 628a8b8b..c0375fa3 100644 --- a/docs/reference/calc_coil_noise_sd.html +++ b/docs/reference/calc_coil_noise_sd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/calc_ed_from_lambda.html b/docs/reference/calc_ed_from_lambda.html index 28850604..05f19331 100644 --- a/docs/reference/calc_ed_from_lambda.html +++ b/docs/reference/calc_ed_from_lambda.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/calc_peak_info_vec.html b/docs/reference/calc_peak_info_vec.html index 79ca2ef8..fa2f7dff 100644 --- a/docs/reference/calc_peak_info_vec.html +++ b/docs/reference/calc_peak_info_vec.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/calc_sd_poly.html b/docs/reference/calc_sd_poly.html index faa09d9d..a7d92206 100644 --- a/docs/reference/calc_sd_poly.html +++ b/docs/reference/calc_sd_poly.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/calc_spec_diff.html b/docs/reference/calc_spec_diff.html index 0fb49f8f..2e576a41 100644 --- a/docs/reference/calc_spec_diff.html +++ b/docs/reference/calc_spec_diff.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/calc_spec_snr.html b/docs/reference/calc_spec_snr.html index fb6b485d..1af10f23 100644 --- a/docs/reference/calc_spec_snr.html +++ b/docs/reference/calc_spec_snr.html @@ -18,7 +18,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/check_lcm.html b/docs/reference/check_lcm.html index 71314553..021fca53 100644 --- a/docs/reference/check_lcm.html +++ b/docs/reference/check_lcm.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/check_tqn.html b/docs/reference/check_tqn.html index bc4ee2d7..43bd1096 100644 --- a/docs/reference/check_tqn.html +++ b/docs/reference/check_tqn.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/circ_mask.html b/docs/reference/circ_mask.html index d35f69d9..f35ec94a 100644 --- a/docs/reference/circ_mask.html +++ b/docs/reference/circ_mask.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/coherence_filter.html b/docs/reference/coherence_filter.html index 2350ac86..c91ec9d4 100644 --- a/docs/reference/coherence_filter.html +++ b/docs/reference/coherence_filter.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/collapse_to_dyns.html b/docs/reference/collapse_to_dyns.html index 992dd68d..c96c365a 100644 --- a/docs/reference/collapse_to_dyns.html +++ b/docs/reference/collapse_to_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/comb_coils.html b/docs/reference/comb_coils.html index 22bd09ed..5c4b6232 100644 --- a/docs/reference/comb_coils.html +++ b/docs/reference/comb_coils.html @@ -19,7 +19,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/comb_fit_list_fit_tables.html b/docs/reference/comb_fit_list_fit_tables.html index 08d6ca81..1458c57e 100644 --- a/docs/reference/comb_fit_list_fit_tables.html +++ b/docs/reference/comb_fit_list_fit_tables.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/comb_fit_list_result_tables.html b/docs/reference/comb_fit_list_result_tables.html index 5e3934ce..d226703a 100644 --- a/docs/reference/comb_fit_list_result_tables.html +++ b/docs/reference/comb_fit_list_result_tables.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/comb_fit_tables.html b/docs/reference/comb_fit_tables.html index fb10785e..bca60fe7 100644 --- a/docs/reference/comb_fit_tables.html +++ b/docs/reference/comb_fit_tables.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/comb_metab_ref.html b/docs/reference/comb_metab_ref.html index 2c8dac52..9128d74e 100644 --- a/docs/reference/comb_metab_ref.html +++ b/docs/reference/comb_metab_ref.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/conv_mrs.html b/docs/reference/conv_mrs.html index b85da008..0356d986 100644 --- a/docs/reference/conv_mrs.html +++ b/docs/reference/conv_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/crop_basis.html b/docs/reference/crop_basis.html index bfc5b867..e47cf72c 100644 --- a/docs/reference/crop_basis.html +++ b/docs/reference/crop_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/crop_spec.html b/docs/reference/crop_spec.html index fa8ad836..1f2305c2 100644 --- a/docs/reference/crop_spec.html +++ b/docs/reference/crop_spec.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/crop_td_pts.html b/docs/reference/crop_td_pts.html index b621024a..60506cce 100644 --- a/docs/reference/crop_td_pts.html +++ b/docs/reference/crop_td_pts.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/crop_td_pts_end.html b/docs/reference/crop_td_pts_end.html index cdec3e4a..d7ebdd15 100644 --- a/docs/reference/crop_td_pts_end.html +++ b/docs/reference/crop_td_pts_end.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/crop_td_pts_pot.html b/docs/reference/crop_td_pts_pot.html index e6910e0a..a60efeaa 100644 --- a/docs/reference/crop_td_pts_pot.html +++ b/docs/reference/crop_td_pts_pot.html @@ -23,7 +23,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/crop_xy.html b/docs/reference/crop_xy.html index 972a06bc..09e2134e 100644 --- a/docs/reference/crop_xy.html +++ b/docs/reference/crop_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/crossprod_3d.html b/docs/reference/crossprod_3d.html index c13865ae..7da93822 100644 --- a/docs/reference/crossprod_3d.html +++ b/docs/reference/crossprod_3d.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/decimate_mrs_fd.html b/docs/reference/decimate_mrs_fd.html index de21ee3c..57a0a130 100644 --- a/docs/reference/decimate_mrs_fd.html +++ b/docs/reference/decimate_mrs_fd.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/decimate_mrs_td.html b/docs/reference/decimate_mrs_td.html index 93bfe686..bfb1e069 100644 --- a/docs/reference/decimate_mrs_td.html +++ b/docs/reference/decimate_mrs_td.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/deconv_mrs.html b/docs/reference/deconv_mrs.html index 27e60aff..e1c1576f 100644 --- a/docs/reference/deconv_mrs.html +++ b/docs/reference/deconv_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/def_N.html b/docs/reference/def_N.html index ba8abefb..75601d2f 100644 --- a/docs/reference/def_N.html +++ b/docs/reference/def_N.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/def_acq_paras.html b/docs/reference/def_acq_paras.html index d203a346..6aa6a4c8 100644 --- a/docs/reference/def_acq_paras.html +++ b/docs/reference/def_acq_paras.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/def_fs.html b/docs/reference/def_fs.html index 0d9d6692..fda10979 100644 --- a/docs/reference/def_fs.html +++ b/docs/reference/def_fs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/def_ft.html b/docs/reference/def_ft.html index 8d64db12..8fc46cfe 100644 --- a/docs/reference/def_ft.html +++ b/docs/reference/def_ft.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/def_nuc.html b/docs/reference/def_nuc.html index 5993fc68..8a297336 100644 --- a/docs/reference/def_nuc.html +++ b/docs/reference/def_nuc.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/def_ref.html b/docs/reference/def_ref.html index b9ffc30b..256f510f 100644 --- a/docs/reference/def_ref.html +++ b/docs/reference/def_ref.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/dicom_reader.html b/docs/reference/dicom_reader.html index ac2b4d06..6cd8845d 100644 --- a/docs/reference/dicom_reader.html +++ b/docs/reference/dicom_reader.html @@ -19,7 +19,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/diff_mrs.html b/docs/reference/diff_mrs.html index 65eb3b7c..b565f00d 100644 --- a/docs/reference/diff_mrs.html +++ b/docs/reference/diff_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/downsample_mrs_fd.html b/docs/reference/downsample_mrs_fd.html index 73afe0aa..cdece900 100644 --- a/docs/reference/downsample_mrs_fd.html +++ b/docs/reference/downsample_mrs_fd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/downsample_mrs_td.html b/docs/reference/downsample_mrs_td.html index ce881613..5cf6f056 100644 --- a/docs/reference/downsample_mrs_td.html +++ b/docs/reference/downsample_mrs_td.html @@ -23,7 +23,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ecc.html b/docs/reference/ecc.html index 44679fb7..63fe83d9 100644 --- a/docs/reference/ecc.html +++ b/docs/reference/ecc.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/elliptical_mask.html b/docs/reference/elliptical_mask.html index 7e0c1e87..c094f8c0 100644 --- a/docs/reference/elliptical_mask.html +++ b/docs/reference/elliptical_mask.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/est_noise_sd.html b/docs/reference/est_noise_sd.html index ce5f12a4..db98f84a 100644 --- a/docs/reference/est_noise_sd.html +++ b/docs/reference/est_noise_sd.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fd2td.html b/docs/reference/fd2td.html index e99f595a..fd1bda7b 100644 --- a/docs/reference/fd2td.html +++ b/docs/reference/fd2td.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fd_conv_filt.html b/docs/reference/fd_conv_filt.html index b869bfd2..77eb447b 100644 --- a/docs/reference/fd_conv_filt.html +++ b/docs/reference/fd_conv_filt.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fd_gauss_smo.html b/docs/reference/fd_gauss_smo.html index 06894d3d..d1c8e85c 100644 --- a/docs/reference/fd_gauss_smo.html +++ b/docs/reference/fd_gauss_smo.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/find_mrs_files.html b/docs/reference/find_mrs_files.html index cdce2aa9..33c40e79 100644 --- a/docs/reference/find_mrs_files.html +++ b/docs/reference/find_mrs_files.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fit_amps.html b/docs/reference/fit_amps.html index f1a3077f..efe0eed7 100644 --- a/docs/reference/fit_amps.html +++ b/docs/reference/fit_amps.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fit_diags.html b/docs/reference/fit_diags.html index 34c7ee5e..798b16cf 100644 --- a/docs/reference/fit_diags.html +++ b/docs/reference/fit_diags.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fit_mrs.html b/docs/reference/fit_mrs.html index f3c1fbe9..f6b0725d 100644 --- a/docs/reference/fit_mrs.html +++ b/docs/reference/fit_mrs.html @@ -19,7 +19,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fit_res2csv.html b/docs/reference/fit_res2csv.html index 621d4ec5..e4d9a4de 100644 --- a/docs/reference/fit_res2csv.html +++ b/docs/reference/fit_res2csv.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fit_t1_ti_array.html b/docs/reference/fit_t1_ti_array.html index 67579cd6..a6fe31c8 100644 --- a/docs/reference/fit_t1_ti_array.html +++ b/docs/reference/fit_t1_ti_array.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fit_t1_tr_array.html b/docs/reference/fit_t1_tr_array.html index 5d76f081..f356fd15 100644 --- a/docs/reference/fit_t1_tr_array.html +++ b/docs/reference/fit_t1_tr_array.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fit_t2_te_array.html b/docs/reference/fit_t2_te_array.html index 22597faa..59fb3a34 100644 --- a/docs/reference/fit_t2_te_array.html +++ b/docs/reference/fit_t2_te_array.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fp_phase.html b/docs/reference/fp_phase.html index ee295eff..893c2a00 100644 --- a/docs/reference/fp_phase.html +++ b/docs/reference/fp_phase.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fp_phase_correct.html b/docs/reference/fp_phase_correct.html index 88a21eca..942a7739 100644 --- a/docs/reference/fp_phase_correct.html +++ b/docs/reference/fp_phase_correct.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fp_scale.html b/docs/reference/fp_scale.html index 4d8a967d..21a422b4 100644 --- a/docs/reference/fp_scale.html +++ b/docs/reference/fp_scale.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/fs.html b/docs/reference/fs.html index cefa6f80..0329be43 100644 --- a/docs/reference/fs.html +++ b/docs/reference/fs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ft_dyns.html b/docs/reference/ft_dyns.html index 080cd568..9bac5d7d 100644 --- a/docs/reference/ft_dyns.html +++ b/docs/reference/ft_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ft_shift.html b/docs/reference/ft_shift.html index e79721ed..94cc102a 100644 --- a/docs/reference/ft_shift.html +++ b/docs/reference/ft_shift.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ft_shift_mat.html b/docs/reference/ft_shift_mat.html index 47220429..1ac5a3f6 100644 --- a/docs/reference/ft_shift_mat.html +++ b/docs/reference/ft_shift_mat.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/gausswin_2d.html b/docs/reference/gausswin_2d.html index ee8e46eb..0e79c912 100644 --- a/docs/reference/gausswin_2d.html +++ b/docs/reference/gausswin_2d.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/gen_F.html b/docs/reference/gen_F.html index 6c94bb32..e2e2c104 100644 --- a/docs/reference/gen_F.html +++ b/docs/reference/gen_F.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/gen_F_xy.html b/docs/reference/gen_F_xy.html index 53bb6330..a46b5c2b 100644 --- a/docs/reference/gen_F_xy.html +++ b/docs/reference/gen_F_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/gen_I.html b/docs/reference/gen_I.html index f2a8412c..5b00d484 100644 --- a/docs/reference/gen_I.html +++ b/docs/reference/gen_I.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_1h_brain_basis_names.html b/docs/reference/get_1h_brain_basis_names.html index 045be21f..dabc1613 100644 --- a/docs/reference/get_1h_brain_basis_names.html +++ b/docs/reference/get_1h_brain_basis_names.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_1h_brain_basis_paras.html b/docs/reference/get_1h_brain_basis_paras.html index 5edbead8..b90d3081 100644 --- a/docs/reference/get_1h_brain_basis_paras.html +++ b/docs/reference/get_1h_brain_basis_paras.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_1h_brain_basis_paras_v1.html b/docs/reference/get_1h_brain_basis_paras_v1.html index 5829afd5..5783be7d 100644 --- a/docs/reference/get_1h_brain_basis_paras_v1.html +++ b/docs/reference/get_1h_brain_basis_paras_v1.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_1h_brain_basis_paras_v2.html b/docs/reference/get_1h_brain_basis_paras_v2.html index ebb45246..d58ab979 100644 --- a/docs/reference/get_1h_brain_basis_paras_v2.html +++ b/docs/reference/get_1h_brain_basis_paras_v2.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_1h_brain_basis_paras_v3.html b/docs/reference/get_1h_brain_basis_paras_v3.html index a727eef6..8f67ae38 100644 --- a/docs/reference/get_1h_brain_basis_paras_v3.html +++ b/docs/reference/get_1h_brain_basis_paras_v3.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_1h_braino_basis_names.html b/docs/reference/get_1h_braino_basis_names.html index a32e0950..73342382 100644 --- a/docs/reference/get_1h_braino_basis_names.html +++ b/docs/reference/get_1h_braino_basis_names.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_1h_spectre_basis_names.html b/docs/reference/get_1h_spectre_basis_names.html index 23d0ffaf..c19bdcdb 100644 --- a/docs/reference/get_1h_spectre_basis_names.html +++ b/docs/reference/get_1h_spectre_basis_names.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_2d_psf.html b/docs/reference/get_2d_psf.html index f846ab86..a64a7afd 100644 --- a/docs/reference/get_2d_psf.html +++ b/docs/reference/get_2d_psf.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_acq_paras.html b/docs/reference/get_acq_paras.html index 433787ca..3827654f 100644 --- a/docs/reference/get_acq_paras.html +++ b/docs/reference/get_acq_paras.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_basis_subset.html b/docs/reference/get_basis_subset.html index 211b692f..35754bac 100644 --- a/docs/reference/get_basis_subset.html +++ b/docs/reference/get_basis_subset.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_dyns.html b/docs/reference/get_dyns.html index f0b0080c..af38710b 100644 --- a/docs/reference/get_dyns.html +++ b/docs/reference/get_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_even_dyns.html b/docs/reference/get_even_dyns.html index bf62220d..623128f7 100644 --- a/docs/reference/get_even_dyns.html +++ b/docs/reference/get_even_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_fh_dyns.html b/docs/reference/get_fh_dyns.html index 5276d3ee..4c56e60f 100644 --- a/docs/reference/get_fh_dyns.html +++ b/docs/reference/get_fh_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_fit_map.html b/docs/reference/get_fit_map.html index 3c4f7012..75d7f123 100644 --- a/docs/reference/get_fit_map.html +++ b/docs/reference/get_fit_map.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_fp.html b/docs/reference/get_fp.html index 93467700..af23b4d7 100644 --- a/docs/reference/get_fp.html +++ b/docs/reference/get_fp.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_guassian_pulse.html b/docs/reference/get_guassian_pulse.html index 1b45bfde..80bb0ea6 100644 --- a/docs/reference/get_guassian_pulse.html +++ b/docs/reference/get_guassian_pulse.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_head_dyns.html b/docs/reference/get_head_dyns.html index a00ac95d..54f0faa4 100644 --- a/docs/reference/get_head_dyns.html +++ b/docs/reference/get_head_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_lcm_cmd.html b/docs/reference/get_lcm_cmd.html index 7119b104..bf06c5a4 100644 --- a/docs/reference/get_lcm_cmd.html +++ b/docs/reference/get_lcm_cmd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_metab.html b/docs/reference/get_metab.html index 2eb3cf21..823306b0 100644 --- a/docs/reference/get_metab.html +++ b/docs/reference/get_metab.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_mol_names.html b/docs/reference/get_mol_names.html index e61ccb77..ed3f52bc 100644 --- a/docs/reference/get_mol_names.html +++ b/docs/reference/get_mol_names.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_mol_paras.html b/docs/reference/get_mol_paras.html index d6bbd6f6..171ed309 100644 --- a/docs/reference/get_mol_paras.html +++ b/docs/reference/get_mol_paras.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_mrs_affine.html b/docs/reference/get_mrs_affine.html index 705693e7..53b6fcc3 100644 --- a/docs/reference/get_mrs_affine.html +++ b/docs/reference/get_mrs_affine.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_mrsi2d_seg.html b/docs/reference/get_mrsi2d_seg.html index 07656622..2324daed 100644 --- a/docs/reference/get_mrsi2d_seg.html +++ b/docs/reference/get_mrsi2d_seg.html @@ -18,7 +18,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_mrsi_voi.html b/docs/reference/get_mrsi_voi.html index 6c534afd..03c4d099 100644 --- a/docs/reference/get_mrsi_voi.html +++ b/docs/reference/get_mrsi_voi.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_mrsi_voxel.html b/docs/reference/get_mrsi_voxel.html index c0bcfe34..f90b883e 100644 --- a/docs/reference/get_mrsi_voxel.html +++ b/docs/reference/get_mrsi_voxel.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_mrsi_voxel_xy_psf.html b/docs/reference/get_mrsi_voxel_xy_psf.html index a291f5ec..dda85a33 100644 --- a/docs/reference/get_mrsi_voxel_xy_psf.html +++ b/docs/reference/get_mrsi_voxel_xy_psf.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_odd_dyns.html b/docs/reference/get_odd_dyns.html index 800e488d..a8ea0459 100644 --- a/docs/reference/get_odd_dyns.html +++ b/docs/reference/get_odd_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_ref.html b/docs/reference/get_ref.html index 84b6fee9..9fb38089 100644 --- a/docs/reference/get_ref.html +++ b/docs/reference/get_ref.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_seg_ind.html b/docs/reference/get_seg_ind.html index 68446018..ff2d6a93 100644 --- a/docs/reference/get_seg_ind.html +++ b/docs/reference/get_seg_ind.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_sh_dyns.html b/docs/reference/get_sh_dyns.html index 261ce3d5..da0146d0 100644 --- a/docs/reference/get_sh_dyns.html +++ b/docs/reference/get_sh_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_slice.html b/docs/reference/get_slice.html index 82169bf7..3f9800ef 100644 --- a/docs/reference/get_slice.html +++ b/docs/reference/get_slice.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_spin_num.html b/docs/reference/get_spin_num.html index 2f37267d..e608dd3d 100644 --- a/docs/reference/get_spin_num.html +++ b/docs/reference/get_spin_num.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_subset.html b/docs/reference/get_subset.html index 1e75033f..f0c0e61a 100644 --- a/docs/reference/get_subset.html +++ b/docs/reference/get_subset.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_svs_voi.html b/docs/reference/get_svs_voi.html index b9ce238c..dcdcfcae 100644 --- a/docs/reference/get_svs_voi.html +++ b/docs/reference/get_svs_voi.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_tail_dyns.html b/docs/reference/get_tail_dyns.html index f633699b..636b35ea 100644 --- a/docs/reference/get_tail_dyns.html +++ b/docs/reference/get_tail_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_td_amp.html b/docs/reference/get_td_amp.html index d9c03273..ee9c6cf7 100644 --- a/docs/reference/get_td_amp.html +++ b/docs/reference/get_td_amp.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_tqn_cmd.html b/docs/reference/get_tqn_cmd.html index 28bbbecf..3e0f6b42 100644 --- a/docs/reference/get_tqn_cmd.html +++ b/docs/reference/get_tqn_cmd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_uncoupled_mol.html b/docs/reference/get_uncoupled_mol.html index 6931fe5e..8580cbdb 100644 --- a/docs/reference/get_uncoupled_mol.html +++ b/docs/reference/get_uncoupled_mol.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_voi_cog.html b/docs/reference/get_voi_cog.html index 97486ab1..1da000a5 100644 --- a/docs/reference/get_voi_cog.html +++ b/docs/reference/get_voi_cog.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_voi_seg.html b/docs/reference/get_voi_seg.html index 83f68a94..c91e9212 100644 --- a/docs/reference/get_voi_seg.html +++ b/docs/reference/get_voi_seg.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_voi_seg_psf.html b/docs/reference/get_voi_seg_psf.html index 263417a3..cedc2220 100644 --- a/docs/reference/get_voi_seg_psf.html +++ b/docs/reference/get_voi_seg_psf.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/get_voxel.html b/docs/reference/get_voxel.html index 63650e34..c401b469 100644 --- a/docs/reference/get_voxel.html +++ b/docs/reference/get_voxel.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/grid_shift_xy.html b/docs/reference/grid_shift_xy.html index 16d2a93d..e9b183b0 100644 --- a/docs/reference/grid_shift_xy.html +++ b/docs/reference/grid_shift_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/gridplot.html b/docs/reference/gridplot.html index 6f631b3e..41b52e25 100644 --- a/docs/reference/gridplot.html +++ b/docs/reference/gridplot.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/gridplot.mrs_data.html b/docs/reference/gridplot.mrs_data.html index ffcc3adf..3b7adc31 100644 --- a/docs/reference/gridplot.mrs_data.html +++ b/docs/reference/gridplot.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/hsvd.html b/docs/reference/hsvd.html index 77b3899f..c770e55f 100644 --- a/docs/reference/hsvd.html +++ b/docs/reference/hsvd.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/hsvd_filt.html b/docs/reference/hsvd_filt.html index 2eaf0113..f7558774 100644 --- a/docs/reference/hsvd_filt.html +++ b/docs/reference/hsvd_filt.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/hsvd_vec.html b/docs/reference/hsvd_vec.html index 09a0c209..2fc13c68 100644 --- a/docs/reference/hsvd_vec.html +++ b/docs/reference/hsvd_vec.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/hz.html b/docs/reference/hz.html index 32bf97be..ece41e63 100644 --- a/docs/reference/hz.html +++ b/docs/reference/hz.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ift_shift.html b/docs/reference/ift_shift.html index c3d7bb3a..4cc37c9c 100644 --- a/docs/reference/ift_shift.html +++ b/docs/reference/ift_shift.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ift_shift_mat.html b/docs/reference/ift_shift_mat.html index 8f0002e0..1d848654 100644 --- a/docs/reference/ift_shift_mat.html +++ b/docs/reference/ift_shift_mat.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/image.mrs_data.html b/docs/reference/image.mrs_data.html index ffd8bbb0..66ac4df5 100644 --- a/docs/reference/image.mrs_data.html +++ b/docs/reference/image.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -94,6 +94,7 @@

Image plot method for objects of class mrs_data.

y_ticks = NULL, vline = NULL, hline = NULL, + legend = FALSE, ... ) @@ -160,6 +161,11 @@

Arguments

draw a horizontal line at the value of hline.

+
legend
+

add a colour bar to the plot using the imagePlot function +from the fields package.

+ +
...

other arguments to pass to the plot method.

diff --git a/docs/reference/img2kspace_xy.html b/docs/reference/img2kspace_xy.html index 9a2fe74e..415815ae 100644 --- a/docs/reference/img2kspace_xy.html +++ b/docs/reference/img2kspace_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/index.html b/docs/reference/index.html index af3f6b3e..998ce2cf 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.18.9000 + 2.18.0 diff --git a/docs/reference/int_spec.html b/docs/reference/int_spec.html index b3976e72..e77e92ef 100644 --- a/docs/reference/int_spec.html +++ b/docs/reference/int_spec.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/interleave_dyns.html b/docs/reference/interleave_dyns.html index b7bbec04..ed7fb869 100644 --- a/docs/reference/interleave_dyns.html +++ b/docs/reference/interleave_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/inv_even_dyns.html b/docs/reference/inv_even_dyns.html index e2bb7154..10d3561f 100644 --- a/docs/reference/inv_even_dyns.html +++ b/docs/reference/inv_even_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/inv_odd_dyns.html b/docs/reference/inv_odd_dyns.html index 775fd88b..cf2c52d7 100644 --- a/docs/reference/inv_odd_dyns.html +++ b/docs/reference/inv_odd_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/is.def.html b/docs/reference/is.def.html index 805a2765..ae05bab3 100644 --- a/docs/reference/is.def.html +++ b/docs/reference/is.def.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/is_fd.html b/docs/reference/is_fd.html index b72228b1..f0e03a5f 100644 --- a/docs/reference/is_fd.html +++ b/docs/reference/is_fd.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/kspace2img_xy.html b/docs/reference/kspace2img_xy.html index f7633379..e63d96c3 100644 --- a/docs/reference/kspace2img_xy.html +++ b/docs/reference/kspace2img_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/l2_reg.html b/docs/reference/l2_reg.html index 563e6340..faeb88e5 100644 --- a/docs/reference/l2_reg.html +++ b/docs/reference/l2_reg.html @@ -18,7 +18,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/lb.html b/docs/reference/lb.html index d3a39acb..99635536 100644 --- a/docs/reference/lb.html +++ b/docs/reference/lb.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/lofdc.html b/docs/reference/lofdc.html index 6badc792..02194033 100644 --- a/docs/reference/lofdc.html +++ b/docs/reference/lofdc.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/lw2alpha.html b/docs/reference/lw2alpha.html index 5e959d5c..87b8de7c 100644 --- a/docs/reference/lw2alpha.html +++ b/docs/reference/lw2alpha.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/lw2beta.html b/docs/reference/lw2beta.html index 25e51415..0421fcd9 100644 --- a/docs/reference/lw2beta.html +++ b/docs/reference/lw2beta.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/make_basis_from_raw.html b/docs/reference/make_basis_from_raw.html index a301f08b..428cd6d2 100644 --- a/docs/reference/make_basis_from_raw.html +++ b/docs/reference/make_basis_from_raw.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mask_dyns.html b/docs/reference/mask_dyns.html index acaa99b3..2d1ee17d 100644 --- a/docs/reference/mask_dyns.html +++ b/docs/reference/mask_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mask_fit_res.html b/docs/reference/mask_fit_res.html index 282487d5..36bca6a3 100644 --- a/docs/reference/mask_fit_res.html +++ b/docs/reference/mask_fit_res.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mask_xy.html b/docs/reference/mask_xy.html index 69757216..c3fe467b 100644 --- a/docs/reference/mask_xy.html +++ b/docs/reference/mask_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mask_xy_corners.html b/docs/reference/mask_xy_corners.html index 55f7e3af..6fe6558f 100644 --- a/docs/reference/mask_xy_corners.html +++ b/docs/reference/mask_xy_corners.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mask_xy_ellipse.html b/docs/reference/mask_xy_ellipse.html index 0d9e28c3..6b146783 100644 --- a/docs/reference/mask_xy_ellipse.html +++ b/docs/reference/mask_xy_ellipse.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mask_xy_mat.html b/docs/reference/mask_xy_mat.html index 13298296..b3a83290 100644 --- a/docs/reference/mask_xy_mat.html +++ b/docs/reference/mask_xy_mat.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mat2mrs_data.html b/docs/reference/mat2mrs_data.html index 18238230..f2ef389f 100644 --- a/docs/reference/mat2mrs_data.html +++ b/docs/reference/mat2mrs_data.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/matexp.html b/docs/reference/matexp.html index 8fec885d..ae28c411 100644 --- a/docs/reference/matexp.html +++ b/docs/reference/matexp.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/max_mrs.html b/docs/reference/max_mrs.html index e0f68e59..48d8204e 100644 --- a/docs/reference/max_mrs.html +++ b/docs/reference/max_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/max_mrs_interp.html b/docs/reference/max_mrs_interp.html index 41fd4eeb..ef3da7b8 100644 --- a/docs/reference/max_mrs_interp.html +++ b/docs/reference/max_mrs_interp.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mean.list.html b/docs/reference/mean.list.html index 8d8cd90a..0d0b8c5f 100644 --- a/docs/reference/mean.list.html +++ b/docs/reference/mean.list.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mean.mrs_data.html b/docs/reference/mean.mrs_data.html index cc2cf6d7..52c01022 100644 --- a/docs/reference/mean.mrs_data.html +++ b/docs/reference/mean.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mean_dyn_blocks.html b/docs/reference/mean_dyn_blocks.html index dea20523..7e9200ba 100644 --- a/docs/reference/mean_dyn_blocks.html +++ b/docs/reference/mean_dyn_blocks.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mean_dyn_pairs.html b/docs/reference/mean_dyn_pairs.html index a042cf0b..e58fc970 100644 --- a/docs/reference/mean_dyn_pairs.html +++ b/docs/reference/mean_dyn_pairs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mean_dyns.html b/docs/reference/mean_dyns.html index ceb8f833..70e16f83 100644 --- a/docs/reference/mean_dyns.html +++ b/docs/reference/mean_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mean_mrs_list.html b/docs/reference/mean_mrs_list.html index 221a02e6..0f4032a8 100644 --- a/docs/reference/mean_mrs_list.html +++ b/docs/reference/mean_mrs_list.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mean_vec_blocks.html b/docs/reference/mean_vec_blocks.html index 421e618b..7c478899 100644 --- a/docs/reference/mean_vec_blocks.html +++ b/docs/reference/mean_vec_blocks.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/median_dyns.html b/docs/reference/median_dyns.html index 97cf2538..546ddb38 100644 --- a/docs/reference/median_dyns.html +++ b/docs/reference/median_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mod_td.html b/docs/reference/mod_td.html index 2fd36ab8..c2bed74f 100644 --- a/docs/reference/mod_td.html +++ b/docs/reference/mod_td.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mrs_data2basis.html b/docs/reference/mrs_data2basis.html index de8f8636..a2b3f544 100644 --- a/docs/reference/mrs_data2basis.html +++ b/docs/reference/mrs_data2basis.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mrs_data2mat.html b/docs/reference/mrs_data2mat.html index 0dba02d8..c3db99c6 100644 --- a/docs/reference/mrs_data2mat.html +++ b/docs/reference/mrs_data2mat.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mrs_data2vec.html b/docs/reference/mrs_data2vec.html index 55cf43e4..688d28b6 100644 --- a/docs/reference/mrs_data2vec.html +++ b/docs/reference/mrs_data2vec.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mvfftshift.html b/docs/reference/mvfftshift.html index 1a1df55f..c3103287 100644 --- a/docs/reference/mvfftshift.html +++ b/docs/reference/mvfftshift.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/mvifftshift.html b/docs/reference/mvifftshift.html index d55fdb0f..e4b38d14 100644 --- a/docs/reference/mvifftshift.html +++ b/docs/reference/mvifftshift.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/n2coord.html b/docs/reference/n2coord.html index 1b3142be..e0dcdc40 100644 --- a/docs/reference/n2coord.html +++ b/docs/reference/n2coord.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/nifti_flip_lr.html b/docs/reference/nifti_flip_lr.html index e83012ea..ca5b01f1 100644 --- a/docs/reference/nifti_flip_lr.html +++ b/docs/reference/nifti_flip_lr.html @@ -23,7 +23,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/one_page_pdf.html b/docs/reference/one_page_pdf.html index 2831d50a..18ac8b9b 100644 --- a/docs/reference/one_page_pdf.html +++ b/docs/reference/one_page_pdf.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ortho3.html b/docs/reference/ortho3.html index 7d07584a..a99d8cbc 100644 --- a/docs/reference/ortho3.html +++ b/docs/reference/ortho3.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ortho3_inter.html b/docs/reference/ortho3_inter.html index a17b0842..e3b81ceb 100644 --- a/docs/reference/ortho3_inter.html +++ b/docs/reference/ortho3_inter.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/peak_info.html b/docs/reference/peak_info.html index 2ad1e90c..d40a1f6a 100644 --- a/docs/reference/peak_info.html +++ b/docs/reference/peak_info.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/pg_extrap_xy.html b/docs/reference/pg_extrap_xy.html index 54004629..0bc2c516 100644 --- a/docs/reference/pg_extrap_xy.html +++ b/docs/reference/pg_extrap_xy.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/phase.html b/docs/reference/phase.html index 08963a1c..e580b122 100644 --- a/docs/reference/phase.html +++ b/docs/reference/phase.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot.fit_result.html b/docs/reference/plot.fit_result.html index 7e47f6a2..f670defd 100644 --- a/docs/reference/plot.fit_result.html +++ b/docs/reference/plot.fit_result.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -99,6 +99,7 @@

Plot the fitting results of an object of class fit_result.

show_grid = TRUE, grid_nx = NULL, grid_ny = NA, + invert_fit = FALSE, ... ) @@ -185,6 +186,10 @@

Arguments

as above.

+
invert_fit
+

show the fit result "upside-down"/

+ +
...

further arguments to plot method.

diff --git a/docs/reference/plot.mrs_data.html b/docs/reference/plot.mrs_data.html index 54c10fba..8d0bd98e 100644 --- a/docs/reference/plot.mrs_data.html +++ b/docs/reference/plot.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_bc.html b/docs/reference/plot_bc.html index a9809d40..46618a18 100644 --- a/docs/reference/plot_bc.html +++ b/docs/reference/plot_bc.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_slice_fit.html b/docs/reference/plot_slice_fit.html index 5e7cf3f2..4cdbcf19 100644 --- a/docs/reference/plot_slice_fit.html +++ b/docs/reference/plot_slice_fit.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_slice_fit_inter.html b/docs/reference/plot_slice_fit_inter.html index 47e4b428..671e0ed7 100644 --- a/docs/reference/plot_slice_fit_inter.html +++ b/docs/reference/plot_slice_fit_inter.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_slice_map.html b/docs/reference/plot_slice_map.html index c57052d1..3a9a11e2 100644 --- a/docs/reference/plot_slice_map.html +++ b/docs/reference/plot_slice_map.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_slice_map_inter.html b/docs/reference/plot_slice_map_inter.html index 50928db2..417ecaa9 100644 --- a/docs/reference/plot_slice_map_inter.html +++ b/docs/reference/plot_slice_map_inter.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_spec_sd.html b/docs/reference/plot_spec_sd.html index e8d57ea0..5ae3d011 100644 --- a/docs/reference/plot_spec_sd.html +++ b/docs/reference/plot_spec_sd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_voi_overlay.html b/docs/reference/plot_voi_overlay.html index 81bdd7b2..2d062380 100644 --- a/docs/reference/plot_voi_overlay.html +++ b/docs/reference/plot_voi_overlay.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/plot_voi_overlay_seg.html b/docs/reference/plot_voi_overlay_seg.html index 0fa975fa..d24e954e 100644 --- a/docs/reference/plot_voi_overlay_seg.html +++ b/docs/reference/plot_voi_overlay_seg.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ppm.html b/docs/reference/ppm.html index e87acf94..bef6bcbd 100644 --- a/docs/reference/ppm.html +++ b/docs/reference/ppm.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/precomp.html b/docs/reference/precomp.html index 8285166b..164b3deb 100644 --- a/docs/reference/precomp.html +++ b/docs/reference/precomp.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/print.fit_result.html b/docs/reference/print.fit_result.html index 6c95f8e3..33d88413 100644 --- a/docs/reference/print.fit_result.html +++ b/docs/reference/print.fit_result.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/print.mrs_data.html b/docs/reference/print.mrs_data.html index 0ae8a47d..e4dc77c3 100644 --- a/docs/reference/print.mrs_data.html +++ b/docs/reference/print.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/qn_states.html b/docs/reference/qn_states.html index 20c30392..1bbd06a5 100644 --- a/docs/reference/qn_states.html +++ b/docs/reference/qn_states.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/rats.html b/docs/reference/rats.html index ff366a22..ea2f8008 100644 --- a/docs/reference/rats.html +++ b/docs/reference/rats.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/re_weighting.html b/docs/reference/re_weighting.html index 4cf6afbe..eaa41800 100644 --- a/docs/reference/re_weighting.html +++ b/docs/reference/re_weighting.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_basis.html b/docs/reference/read_basis.html index a9ac797e..b7c6c37c 100644 --- a/docs/reference/read_basis.html +++ b/docs/reference/read_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_ima_coil_dir.html b/docs/reference/read_ima_coil_dir.html index 0cd11054..fa1a8fa2 100644 --- a/docs/reference/read_ima_coil_dir.html +++ b/docs/reference/read_ima_coil_dir.html @@ -23,7 +23,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_ima_dyn_dir.html b/docs/reference/read_ima_dyn_dir.html index e4aca7ae..5b4f2627 100644 --- a/docs/reference/read_ima_dyn_dir.html +++ b/docs/reference/read_ima_dyn_dir.html @@ -23,7 +23,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_lcm_coord.html b/docs/reference/read_lcm_coord.html index 98e39b58..f44c5469 100644 --- a/docs/reference/read_lcm_coord.html +++ b/docs/reference/read_lcm_coord.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_mrs.html b/docs/reference/read_mrs.html index 2b6c66f9..8048dfab 100644 --- a/docs/reference/read_mrs.html +++ b/docs/reference/read_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_mrs_tqn.html b/docs/reference/read_mrs_tqn.html index 9eede504..6aca3b4f 100644 --- a/docs/reference/read_mrs_tqn.html +++ b/docs/reference/read_mrs_tqn.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_pulse_ascii.html b/docs/reference/read_pulse_ascii.html index c9cbdc9a..a30c33a4 100644 --- a/docs/reference/read_pulse_ascii.html +++ b/docs/reference/read_pulse_ascii.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_pulse_bruker.html b/docs/reference/read_pulse_bruker.html index cd7e3227..f2f7a211 100644 --- a/docs/reference/read_pulse_bruker.html +++ b/docs/reference/read_pulse_bruker.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_pulse_pta.html b/docs/reference/read_pulse_pta.html index d94837af..2bf65000 100644 --- a/docs/reference/read_pulse_pta.html +++ b/docs/reference/read_pulse_pta.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_siemens_txt_hdr.html b/docs/reference/read_siemens_txt_hdr.html index a28dba8a..c3083507 100644 --- a/docs/reference/read_siemens_txt_hdr.html +++ b/docs/reference/read_siemens_txt_hdr.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_tqn_fit.html b/docs/reference/read_tqn_fit.html index 2f7a46f5..ee0ea96e 100644 --- a/docs/reference/read_tqn_fit.html +++ b/docs/reference/read_tqn_fit.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/read_tqn_result.html b/docs/reference/read_tqn_result.html index 0b2bd08a..e2ba81c5 100644 --- a/docs/reference/read_tqn_result.html +++ b/docs/reference/read_tqn_result.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/recon_imag.html b/docs/reference/recon_imag.html index 8383517a..5345accf 100644 --- a/docs/reference/recon_imag.html +++ b/docs/reference/recon_imag.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/recon_imag_vec.html b/docs/reference/recon_imag_vec.html index 4f1a9587..340bd563 100644 --- a/docs/reference/recon_imag_vec.html +++ b/docs/reference/recon_imag_vec.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/recon_twix_2d_mrsi.html b/docs/reference/recon_twix_2d_mrsi.html index 687a4dee..bdb4cf4f 100644 --- a/docs/reference/recon_twix_2d_mrsi.html +++ b/docs/reference/recon_twix_2d_mrsi.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/rectangular_mask.html b/docs/reference/rectangular_mask.html index 96edea0d..e9e8735c 100644 --- a/docs/reference/rectangular_mask.html +++ b/docs/reference/rectangular_mask.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/reexports.html b/docs/reference/reexports.html index b9b92396..a149c387 100644 --- a/docs/reference/reexports.html +++ b/docs/reference/reexports.html @@ -24,7 +24,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/rep_array_dim.html b/docs/reference/rep_array_dim.html index e663c321..dba376df 100644 --- a/docs/reference/rep_array_dim.html +++ b/docs/reference/rep_array_dim.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/rep_dyn.html b/docs/reference/rep_dyn.html index 3fc97662..7086cff4 100644 --- a/docs/reference/rep_dyn.html +++ b/docs/reference/rep_dyn.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/rep_mrs.html b/docs/reference/rep_mrs.html index 1b493144..3afa65b4 100644 --- a/docs/reference/rep_mrs.html +++ b/docs/reference/rep_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/resample_basis.html b/docs/reference/resample_basis.html index cf2cd5d0..b1d2ce76 100644 --- a/docs/reference/resample_basis.html +++ b/docs/reference/resample_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/resample_img.html b/docs/reference/resample_img.html index ec8759d0..6e58c8e1 100644 --- a/docs/reference/resample_img.html +++ b/docs/reference/resample_img.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/resample_voi.html b/docs/reference/resample_voi.html index 3a8c5585..3eddc737 100644 --- a/docs/reference/resample_voi.html +++ b/docs/reference/resample_voi.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/reslice_to_mrs.html b/docs/reference/reslice_to_mrs.html index 4af45855..d6ddf47a 100644 --- a/docs/reference/reslice_to_mrs.html +++ b/docs/reference/reslice_to_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/reson_table2mrs_data.html b/docs/reference/reson_table2mrs_data.html index f9f69a1f..0aab4231 100644 --- a/docs/reference/reson_table2mrs_data.html +++ b/docs/reference/reson_table2mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/rm_dyns.html b/docs/reference/rm_dyns.html index 16592a4e..28f808be 100644 --- a/docs/reference/rm_dyns.html +++ b/docs/reference/rm_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_amp_molal.html b/docs/reference/scale_amp_molal.html index 10530ede..b8cbd737 100644 --- a/docs/reference/scale_amp_molal.html +++ b/docs/reference/scale_amp_molal.html @@ -25,7 +25,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_amp_molal_pvc.html b/docs/reference/scale_amp_molal_pvc.html index cfb2bf21..abdc3504 100644 --- a/docs/reference/scale_amp_molal_pvc.html +++ b/docs/reference/scale_amp_molal_pvc.html @@ -24,7 +24,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_amp_molar.html b/docs/reference/scale_amp_molar.html index 4a566b6f..fd8ce605 100644 --- a/docs/reference/scale_amp_molar.html +++ b/docs/reference/scale_amp_molar.html @@ -22,7 +22,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_amp_molar2molal_pvc.html b/docs/reference/scale_amp_molar2molal_pvc.html index 32e3ab6c..b2b339a2 100644 --- a/docs/reference/scale_amp_molar2molal_pvc.html +++ b/docs/reference/scale_amp_molar2molal_pvc.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_amp_ratio.html b/docs/reference/scale_amp_ratio.html index 019422f5..324510b9 100644 --- a/docs/reference/scale_amp_ratio.html +++ b/docs/reference/scale_amp_ratio.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_amp_ratio_value.html b/docs/reference/scale_amp_ratio_value.html index 1253dacd..c4d638b7 100644 --- a/docs/reference/scale_amp_ratio_value.html +++ b/docs/reference/scale_amp_ratio_value.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_amp_water_ratio.html b/docs/reference/scale_amp_water_ratio.html index fbb08cba..22d3cdf0 100644 --- a/docs/reference/scale_amp_water_ratio.html +++ b/docs/reference/scale_amp_water_ratio.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_basis_amp.html b/docs/reference/scale_basis_amp.html index 1da5275b..f63d47bd 100644 --- a/docs/reference/scale_basis_amp.html +++ b/docs/reference/scale_basis_amp.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_basis_from_singlet.html b/docs/reference/scale_basis_from_singlet.html index 62437239..2c12dc32 100644 --- a/docs/reference/scale_basis_from_singlet.html +++ b/docs/reference/scale_basis_from_singlet.html @@ -23,7 +23,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_mrs_amp.html b/docs/reference/scale_mrs_amp.html index cbbbe526..1ae6e680 100644 --- a/docs/reference/scale_mrs_amp.html +++ b/docs/reference/scale_mrs_amp.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/scale_spec.html b/docs/reference/scale_spec.html index b5cdc84a..395b6a94 100644 --- a/docs/reference/scale_spec.html +++ b/docs/reference/scale_spec.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -84,7 +84,7 @@

Scale mrs_data to a spectral region.

operator = "sum", freq_scale = "ppm", mode = "re", - mean_dyns = TRUE, + mean_dyns = NULL, ret_scale_factor = FALSE ) diff --git a/docs/reference/sd.html b/docs/reference/sd.html index 01e2dfbc..4f028582 100644 --- a/docs/reference/sd.html +++ b/docs/reference/sd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sd.mrs_data.html b/docs/reference/sd.mrs_data.html index df609d3a..25541415 100644 --- a/docs/reference/sd.mrs_data.html +++ b/docs/reference/sd.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seconds.html b/docs/reference/seconds.html index fab1ee51..ee20ca29 100644 --- a/docs/reference/seconds.html +++ b/docs/reference/seconds.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_cpmg_ideal.html b/docs/reference/seq_cpmg_ideal.html index c4e5c81a..1ee28f5e 100644 --- a/docs/reference/seq_cpmg_ideal.html +++ b/docs/reference/seq_cpmg_ideal.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_mega_press_ideal.html b/docs/reference/seq_mega_press_ideal.html index 46303157..7349e3d5 100644 --- a/docs/reference/seq_mega_press_ideal.html +++ b/docs/reference/seq_mega_press_ideal.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_press_2d_shaped.html b/docs/reference/seq_press_2d_shaped.html index 0baa4488..c912c696 100644 --- a/docs/reference/seq_press_2d_shaped.html +++ b/docs/reference/seq_press_2d_shaped.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_press_ideal.html b/docs/reference/seq_press_ideal.html index c074a3b5..e225a16b 100644 --- a/docs/reference/seq_press_ideal.html +++ b/docs/reference/seq_press_ideal.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_pulse_acquire.html b/docs/reference/seq_pulse_acquire.html index 01338613..dee2ff4d 100644 --- a/docs/reference/seq_pulse_acquire.html +++ b/docs/reference/seq_pulse_acquire.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_slaser_ideal.html b/docs/reference/seq_slaser_ideal.html index c6136219..f4ddf373 100644 --- a/docs/reference/seq_slaser_ideal.html +++ b/docs/reference/seq_slaser_ideal.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_spin_echo_ideal.html b/docs/reference/seq_spin_echo_ideal.html index 041eb7eb..e7776bf7 100644 --- a/docs/reference/seq_spin_echo_ideal.html +++ b/docs/reference/seq_spin_echo_ideal.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_steam_ideal.html b/docs/reference/seq_steam_ideal.html index 17be5434..0e9f0046 100644 --- a/docs/reference/seq_steam_ideal.html +++ b/docs/reference/seq_steam_ideal.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_steam_ideal_cof.html b/docs/reference/seq_steam_ideal_cof.html index 782f8e0f..78e5f8b9 100644 --- a/docs/reference/seq_steam_ideal_cof.html +++ b/docs/reference/seq_steam_ideal_cof.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/seq_steam_ideal_young.html b/docs/reference/seq_steam_ideal_young.html index aa511a57..009b5186 100644 --- a/docs/reference/seq_steam_ideal_young.html +++ b/docs/reference/seq_steam_ideal_young.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_Ntrans.html b/docs/reference/set_Ntrans.html index 60ff0ccf..d3e5a865 100644 --- a/docs/reference/set_Ntrans.html +++ b/docs/reference/set_Ntrans.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_def_acq_paras.html b/docs/reference/set_def_acq_paras.html index 42d08bd1..4feb701b 100644 --- a/docs/reference/set_def_acq_paras.html +++ b/docs/reference/set_def_acq_paras.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_lcm_cmd.html b/docs/reference/set_lcm_cmd.html index 3e1e52b2..0024cb8d 100644 --- a/docs/reference/set_lcm_cmd.html +++ b/docs/reference/set_lcm_cmd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_lw.html b/docs/reference/set_lw.html index 91b4a0b9..dbf31e65 100644 --- a/docs/reference/set_lw.html +++ b/docs/reference/set_lw.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_mask_xy_mat.html b/docs/reference/set_mask_xy_mat.html index 7473b889..c07ee5d7 100644 --- a/docs/reference/set_mask_xy_mat.html +++ b/docs/reference/set_mask_xy_mat.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_precomp_mode.html b/docs/reference/set_precomp_mode.html index a65ec631..36e6ed0b 100644 --- a/docs/reference/set_precomp_mode.html +++ b/docs/reference/set_precomp_mode.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_precomp_verbose.html b/docs/reference/set_precomp_verbose.html index 81b71734..6299e45c 100644 --- a/docs/reference/set_precomp_verbose.html +++ b/docs/reference/set_precomp_verbose.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_ref.html b/docs/reference/set_ref.html index 6f2b752b..a5ec4c5b 100644 --- a/docs/reference/set_ref.html +++ b/docs/reference/set_ref.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_td_pts.html b/docs/reference/set_td_pts.html index 28af911d..7c232474 100644 --- a/docs/reference/set_td_pts.html +++ b/docs/reference/set_td_pts.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_tqn_cmd.html b/docs/reference/set_tqn_cmd.html index a0d6f498..6ad76eb5 100644 --- a/docs/reference/set_tqn_cmd.html +++ b/docs/reference/set_tqn_cmd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/set_tr.html b/docs/reference/set_tr.html index 91345865..2bc0222e 100644 --- a/docs/reference/set_tr.html +++ b/docs/reference/set_tr.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/shift.html b/docs/reference/shift.html index 4c09bb67..370782cd 100644 --- a/docs/reference/shift.html +++ b/docs/reference/shift.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/shift_basis.html b/docs/reference/shift_basis.html index 3534285e..33947742 100644 --- a/docs/reference/shift_basis.html +++ b/docs/reference/shift_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_basis.html b/docs/reference/sim_basis.html index 28830d1e..76d6a5d5 100644 --- a/docs/reference/sim_basis.html +++ b/docs/reference/sim_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_basis_1h_brain.html b/docs/reference/sim_basis_1h_brain.html index 3a92c849..712b3c5c 100644 --- a/docs/reference/sim_basis_1h_brain.html +++ b/docs/reference/sim_basis_1h_brain.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_basis_1h_brain_press.html b/docs/reference/sim_basis_1h_brain_press.html index 9a924032..81e4e7db 100644 --- a/docs/reference/sim_basis_1h_brain_press.html +++ b/docs/reference/sim_basis_1h_brain_press.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_basis_mm_lip_lcm.html b/docs/reference/sim_basis_mm_lip_lcm.html index 2d6891e7..f80b3e22 100644 --- a/docs/reference/sim_basis_mm_lip_lcm.html +++ b/docs/reference/sim_basis_mm_lip_lcm.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_basis_tqn.html b/docs/reference/sim_basis_tqn.html index bcf0775c..3872bcc5 100644 --- a/docs/reference/sim_basis_tqn.html +++ b/docs/reference/sim_basis_tqn.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_brain_1h.html b/docs/reference/sim_brain_1h.html index c3454d61..6c253f08 100644 --- a/docs/reference/sim_brain_1h.html +++ b/docs/reference/sim_brain_1h.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_mol.html b/docs/reference/sim_mol.html index acb0f233..6dddb937 100644 --- a/docs/reference/sim_mol.html +++ b/docs/reference/sim_mol.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_noise.html b/docs/reference/sim_noise.html index a51bce88..211bbd4f 100644 --- a/docs/reference/sim_noise.html +++ b/docs/reference/sim_noise.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_resonances.html b/docs/reference/sim_resonances.html index 60428af4..2b452e82 100644 --- a/docs/reference/sim_resonances.html +++ b/docs/reference/sim_resonances.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_th_excit_profile.html b/docs/reference/sim_th_excit_profile.html index 2e312f8f..22ec3127 100644 --- a/docs/reference/sim_th_excit_profile.html +++ b/docs/reference/sim_th_excit_profile.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sim_zero.html b/docs/reference/sim_zero.html index 8bc0493a..5a592838 100644 --- a/docs/reference/sim_zero.html +++ b/docs/reference/sim_zero.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/smooth_dyns.html b/docs/reference/smooth_dyns.html index 369bf7bd..aa794d3d 100644 --- a/docs/reference/smooth_dyns.html +++ b/docs/reference/smooth_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sort_basis.html b/docs/reference/sort_basis.html index 1264033f..a34185e4 100644 --- a/docs/reference/sort_basis.html +++ b/docs/reference/sort_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spant-package.html b/docs/reference/spant-package.html index 1b8a86d0..279d9e1a 100644 --- a/docs/reference/spant-package.html +++ b/docs/reference/spant-package.html @@ -18,7 +18,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spant_abfit_benchmark.html b/docs/reference/spant_abfit_benchmark.html index b6d7b7de..4879a111 100644 --- a/docs/reference/spant_abfit_benchmark.html +++ b/docs/reference/spant_abfit_benchmark.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spant_mpress_drift.html b/docs/reference/spant_mpress_drift.html index ac2c5fea..bd7cf5a6 100644 --- a/docs/reference/spant_mpress_drift.html +++ b/docs/reference/spant_mpress_drift.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spant_simulation_benchmark.html b/docs/reference/spant_simulation_benchmark.html index 734bac74..a4d1335f 100644 --- a/docs/reference/spant_simulation_benchmark.html +++ b/docs/reference/spant_simulation_benchmark.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spec_decomp.html b/docs/reference/spec_decomp.html index c51b9128..06147e99 100644 --- a/docs/reference/spec_decomp.html +++ b/docs/reference/spec_decomp.html @@ -19,7 +19,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spec_op.html b/docs/reference/spec_op.html index 56e78083..dffaf184 100644 --- a/docs/reference/spec_op.html +++ b/docs/reference/spec_op.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spin_sys.html b/docs/reference/spin_sys.html index df71f896..941c270e 100644 --- a/docs/reference/spin_sys.html +++ b/docs/reference/spin_sys.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/spm_pve2categorical.html b/docs/reference/spm_pve2categorical.html index af2962d1..63292e36 100644 --- a/docs/reference/spm_pve2categorical.html +++ b/docs/reference/spm_pve2categorical.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/ssp.html b/docs/reference/ssp.html index 3a47af12..37292735 100644 --- a/docs/reference/ssp.html +++ b/docs/reference/ssp.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/stackplot.fit_result.html b/docs/reference/stackplot.fit_result.html index a63258ab..f6dc70f9 100644 --- a/docs/reference/stackplot.fit_result.html +++ b/docs/reference/stackplot.fit_result.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -106,6 +106,7 @@

Plot the fitting results of an object of class fit_result with show_grid = TRUE, grid_nx = NULL, grid_ny = NA, + invert_fit = FALSE, ... ) @@ -204,6 +205,10 @@

Arguments

as above.

+
invert_fit
+

show the fit result "upside-down"/

+ +
...

further arguments to plot method.

diff --git a/docs/reference/stackplot.html b/docs/reference/stackplot.html index 1eb17153..c56b0fc3 100644 --- a/docs/reference/stackplot.html +++ b/docs/reference/stackplot.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/stackplot.mrs_data.html b/docs/reference/stackplot.mrs_data.html index 53fb7352..be66dcc1 100644 --- a/docs/reference/stackplot.mrs_data.html +++ b/docs/reference/stackplot.mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -98,7 +98,6 @@

Stackplot plotting method for objects of class mrs_data.

bty = NULL, labels = NULL, lab_cex = 1, - right_marg = NULL, bl_lty = NULL, restore_def_par = TRUE, show_grid = NULL, @@ -106,6 +105,7 @@

Stackplot plotting method for objects of class mrs_data.

grid_ny = NA, lwd = NULL, vline = NULL, + mar = NULL, ... ) @@ -191,10 +191,6 @@

Arguments

label size.

-
right_marg
-

change the size of the right plot margin.

- -
bl_lty

linetype for the y = 0 baseline trace. A default value NULL results in no baseline being plotted.

@@ -228,6 +224,10 @@

Arguments

x-value to draw a vertical line.

+
mar
+

option to adjust the plot margins. See ?par.

+ +
...

other arguments to pass to the matplot method.

diff --git a/docs/reference/sub_first_dyn.html b/docs/reference/sub_first_dyn.html index 0a79b683..3a977dae 100644 --- a/docs/reference/sub_first_dyn.html +++ b/docs/reference/sub_first_dyn.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sub_mean_dyns.html b/docs/reference/sub_mean_dyns.html index c31c05a4..351cc475 100644 --- a/docs/reference/sub_mean_dyns.html +++ b/docs/reference/sub_mean_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sub_median_dyns.html b/docs/reference/sub_median_dyns.html index 0842861d..f5e7deb1 100644 --- a/docs/reference/sub_median_dyns.html +++ b/docs/reference/sub_median_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sum_coils.html b/docs/reference/sum_coils.html index 157e952f..4f7feeab 100644 --- a/docs/reference/sum_coils.html +++ b/docs/reference/sum_coils.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sum_dyns.html b/docs/reference/sum_dyns.html index 29c391a9..7ccd34f5 100644 --- a/docs/reference/sum_dyns.html +++ b/docs/reference/sum_dyns.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sum_mrs.html b/docs/reference/sum_mrs.html index 22146ce1..ffed8137 100644 --- a/docs/reference/sum_mrs.html +++ b/docs/reference/sum_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/sum_mrs_list.html b/docs/reference/sum_mrs_list.html index cb5d516a..8c3b57c7 100644 --- a/docs/reference/sum_mrs_list.html +++ b/docs/reference/sum_mrs_list.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/svs_1h_brain_analysis.html b/docs/reference/svs_1h_brain_analysis.html index 363ee35d..0071673a 100644 --- a/docs/reference/svs_1h_brain_analysis.html +++ b/docs/reference/svs_1h_brain_analysis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/svs_1h_brain_analysis_dev.html b/docs/reference/svs_1h_brain_analysis_dev.html index 3ed06ca9..460433ba 100644 --- a/docs/reference/svs_1h_brain_analysis_dev.html +++ b/docs/reference/svs_1h_brain_analysis_dev.html @@ -1,5 +1,5 @@ -Standard SVS 1H brain analysis pipeline. — svs_1h_brain_analysis_dev • Spectroscopy Analysis Tools (spant)Standard SVS 1H brain analysis pipeline. — svs_1h_brain_analysis_dev • Spectroscopy Analysis Tools (spant) @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 @@ -74,7 +74,7 @@

Standard SVS 1H brain analysis pipeline.

-

Standard SVS 1H brain analysis pipeline.

+

Note this function is still under development and liable to changes.

@@ -82,17 +82,17 @@

Standard SVS 1H brain analysis pipeline.

metab, w_ref = NULL, output_dir = NULL, + basis = NULL, p_vols = NULL, append_basis = NULL, remove_basis = NULL, - basis = NULL, - dfp_corr = TRUE, - omit_bad_dynamics = TRUE, + dfp_corr = FALSE, + omit_bad_dynamics = FALSE, te = NULL, tr = NULL, output_ratio = "tCr", ecc = FALSE, - fit_opts = NULL, + abfit_opts = NULL, verbose = FALSE )
@@ -111,6 +111,10 @@

Arguments

directory path to output fitting results.

+
basis
+

precompiled basis set object to use for analysis.

+ +
p_vols

a numeric vector of partial volumes expressed as percentages. Defaults to 100% white matter. A voxel containing 100% gray matter tissue @@ -127,10 +131,6 @@

Arguments

with precompiled basis sets.

-
basis
-

basis set object to use for analysis.

- -
dfp_corr

perform dynamic frequency and phase correction using the RATS method.

@@ -153,7 +153,7 @@

Arguments

output_ratio

optional string to specify a metabolite ratio to output. Defaults to "tCr" and multiple metabolites may be specified for multiple -outputs. Set to NULL to omit.

+outputs. Set as NULL to omit.

ecc
@@ -161,8 +161,8 @@

Arguments

defaults to FALSE.

-
fit_opts
-

options to pass to the fitting method.

+
abfit_opts
+

options to pass to ABfit.

verbose
@@ -170,6 +170,17 @@

Arguments

+
+

Examples

+ 
metab <- system.file("extdata", "philips_spar_sdat_WS.SDAT",
+                     package = "spant")
+w_ref <- system.file("extdata", "philips_spar_sdat_W.SDAT",
+                     package = "spant")
+if (FALSE) {
+fit_result <- svs_1h_brain_analysis(metab, w_ref, "fit_res_dir")
+}
+
+
diff --git a/docs/reference/td2fd.html b/docs/reference/td2fd.html index 74e3de01..fea9d701 100644 --- a/docs/reference/td2fd.html +++ b/docs/reference/td2fd.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/td_conv_filt.html b/docs/reference/td_conv_filt.html index 0c6533ae..e7ac4931 100644 --- a/docs/reference/td_conv_filt.html +++ b/docs/reference/td_conv_filt.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/tdsr.html b/docs/reference/tdsr.html index 2cedf2cf..a913b57a 100644 --- a/docs/reference/tdsr.html +++ b/docs/reference/tdsr.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/te.html b/docs/reference/te.html index 32fd13b1..41d1f3b7 100644 --- a/docs/reference/te.html +++ b/docs/reference/te.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/tr.html b/docs/reference/tr.html index 4c1551a4..8f67eb61 100644 --- a/docs/reference/tr.html +++ b/docs/reference/tr.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/varpro_3_para_opts.html b/docs/reference/varpro_3_para_opts.html index a14ffb2c..2916302c 100644 --- a/docs/reference/varpro_3_para_opts.html +++ b/docs/reference/varpro_3_para_opts.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/varpro_basic_opts.html b/docs/reference/varpro_basic_opts.html index 7f483870..8331c305 100644 --- a/docs/reference/varpro_basic_opts.html +++ b/docs/reference/varpro_basic_opts.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/varpro_opts.html b/docs/reference/varpro_opts.html index 40e78399..366df0e5 100644 --- a/docs/reference/varpro_opts.html +++ b/docs/reference/varpro_opts.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/vec2mrs_data.html b/docs/reference/vec2mrs_data.html index b5f3861c..492ca210 100644 --- a/docs/reference/vec2mrs_data.html +++ b/docs/reference/vec2mrs_data.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/write_basis.html b/docs/reference/write_basis.html index 56801459..f479b052 100644 --- a/docs/reference/write_basis.html +++ b/docs/reference/write_basis.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/write_basis_tqn.html b/docs/reference/write_basis_tqn.html index 6a197ede..fb0677df 100644 --- a/docs/reference/write_basis_tqn.html +++ b/docs/reference/write_basis_tqn.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/write_mrs.html b/docs/reference/write_mrs.html index 4679ef14..4288558c 100644 --- a/docs/reference/write_mrs.html +++ b/docs/reference/write_mrs.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/write_mrs_nifti.html b/docs/reference/write_mrs_nifti.html index 66ad01bd..cb7376a6 100644 --- a/docs/reference/write_mrs_nifti.html +++ b/docs/reference/write_mrs_nifti.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/write_pulse_ascii.html b/docs/reference/write_pulse_ascii.html index dbcae57a..04cf76fd 100644 --- a/docs/reference/write_pulse_ascii.html +++ b/docs/reference/write_pulse_ascii.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/zero_fade_spec.html b/docs/reference/zero_fade_spec.html index 77a223c2..7f3e233e 100644 --- a/docs/reference/zero_fade_spec.html +++ b/docs/reference/zero_fade_spec.html @@ -20,7 +20,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/zero_higher_orders.html b/docs/reference/zero_higher_orders.html index b149c17d..da63b481 100644 --- a/docs/reference/zero_higher_orders.html +++ b/docs/reference/zero_higher_orders.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/zero_td_pts_end.html b/docs/reference/zero_td_pts_end.html index e281219d..e1406c38 100644 --- a/docs/reference/zero_td_pts_end.html +++ b/docs/reference/zero_td_pts_end.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/zf.html b/docs/reference/zf.html index a18a541f..3e395db2 100644 --- a/docs/reference/zf.html +++ b/docs/reference/zf.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0 diff --git a/docs/reference/zf_xy.html b/docs/reference/zf_xy.html index 93eeaf55..8f42e101 100644 --- a/docs/reference/zf_xy.html +++ b/docs/reference/zf_xy.html @@ -17,7 +17,7 @@ Spectroscopy Analysis Tools (spant) - 2.17.0 + 2.18.0