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Unreliable segmentation fault in TransformToIqt doctest #35992

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robertapplin opened this issue Sep 1, 2023 · 3 comments · Fixed by #36360, #37400 or #37725
Closed

Unreliable segmentation fault in TransformToIqt doctest #35992

robertapplin opened this issue Sep 1, 2023 · 3 comments · Fixed by #36360, #37400 or #37725
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@robertapplin
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Bug Issues and pull requests that are regressions or would be considered a bug by users (e.g. crashing) ISIS Team: Spectroscopy Issue and pull requests managed by the Spectroscopy subteam at ISIS Linux Only Only on Linux

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@robertapplin
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robertapplin commented Sep 1, 2023 •
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Describe the bug
There is an unreliable segmentation fault when we run the TransformToIqt usage example in the doctests. We have temporarily commented this example out while we investigate the problem #35991

To Reproduce
It is difficult to repeat the problem. Your best bet to reproduce it is to undo the changes made in #35991 , open a PR, and then use the build_package_from_branch pipeline to run the doctests on linux.

Stacktrace

Document: algorithms/TransformToIqt-v1
--------------------------------------
FileFinder-[Information] found path = /jenkins_workdir/workspace/build_packages_from_branch/source/build/ExternalData/Testing/Data/UnitTest/irs26176_graphite002_red.nxs
Load-[Notice] Load started
Load-[Information] Algorithm: Load v1
Load-[Information] Execution Date: 2023-08-24 10:07:23.761166000
Load-[Information] Execution Duration: -1 seconds
Load-[Information] UUID: 70585e01-93ac-4b89-995f-ce7844caf600
Load-[Information] Parameters:
Load-[Information]   Name: Filename, Value: /jenkins_workdir/ ... aphite002_red.nxs, Default?: No, Direction: Input
Load-[Information]   Name: OutputWorkspace, Value: sample, Default?: No, Direction: Output
Load-[Information]   Name: LoaderName, Value: LoadNexusProcessed, Default?: No, Direction: Output
Load-[Information]   Name: LoaderVersion, Value: 2, Default?: No, Direction: Output
Load-[Information]   Name: SpectrumMin, Value: 1, Default?: Yes, Direction: Input
Load-[Information]   Name: SpectrumMax, Value: 2147483647, Default?: Yes, Direction: Input
Load-[Information]   Name: SpectrumList, Value: , Default?: Yes, Direction: Input
Load-[Information]   Name: EntryNumber, Value: 0, Default?: Yes, Direction: Input
Load-[Information]   Name: LoadHistory, Value: 1, Default?: Yes, Direction: Input
Load-[Information]   Name: FastMultiPeriod, Value: 1, Default?: Yes, Direction: Input
Load-[Information] Using LoadNexusProcessed version 2.
InstrumentDefinitionParser-[Warning] Attribute 'mark-as' is a depricated attribute in Instrument Definition File. Please see the deprecated section of docs.mantidproject.org/concepts/InstrumentDefinitionFile for how to remove this warning message
InstrumentDefinitionParser-[Warning] Attribute 'mark-as' is a depricated attribute in Instrument Definition File. Please see the deprecated section of docs.mantidproject.org/concepts/InstrumentDefinitionFile for how to remove this warning message
InstrumentDefinitionParser-[Information] Loading geometry cache from /home/abc/.mantid/instrument/geometryCache/IRIS615cd1ff9686f1a61ab348fb9c4f3b32a99d1c36.vtp
Load-[Notice] Load successful, Duration 0.08 seconds
FileFinder-[Information] found path = /jenkins_workdir/workspace/build_packages_from_branch/source/build/ExternalData/Testing/Data/UnitTest/irs26173_graphite002_red.nxs
Load-[Notice] Load started
Load-[Information] Algorithm: Load v1
Load-[Information] Execution Date: 2023-08-24 10:07:23.878116000
Load-[Information] Execution Duration: -1 seconds
Load-[Information] UUID: 92d04f1e-50c0-4378-95d2-468a9bbab757
Load-[Information] Parameters:
Load-[Information]   Name: Filename, Value: /jenkins_workdir/ ... aphite002_red.nxs, Default?: No, Direction: Input
Load-[Information]   Name: OutputWorkspace, Value: can, Default?: No, Direction: Output
Load-[Information]   Name: LoaderName, Value: LoadNexusProcessed, Default?: No, Direction: Output
Load-[Information]   Name: LoaderVersion, Value: 2, Default?: No, Direction: Output
Load-[Information]   Name: SpectrumMin, Value: 1, Default?: Yes, Direction: Input
Load-[Information]   Name: SpectrumMax, Value: 2147483647, Default?: Yes, Direction: Input
Load-[Information]   Name: SpectrumList, Value: , Default?: Yes, Direction: Input
Load-[Information]   Name: EntryNumber, Value: 0, Default?: Yes, Direction: Input
Load-[Information]   Name: LoadHistory, Value: 1, Default?: Yes, Direction: Input
Load-[Information]   Name: FastMultiPeriod, Value: 1, Default?: Yes, Direction: Input
Load-[Information] Using LoadNexusProcessed version 2.
Load-[Notice] Load successful, Duration 0.06 seconds
TransformToIqt-[Notice] TransformToIqt started
TransformToIqt-[Information] Algorithm: TransformToIqt v1
TransformToIqt-[Information] Execution Date: 2023-08-24 10:07:23.941486000
TransformToIqt-[Information] Execution Duration: -1 seconds
TransformToIqt-[Information] UUID: 6da78f2f-0448-4d2f-a7f9-8f7643ad973a
TransformToIqt-[Information] Parameters:
TransformToIqt-[Information]   Name: SampleWorkspace, Value: sample, Default?: No, Direction: Input
TransformToIqt-[Information]   Name: ResolutionWorkspace, Value: can, Default?: No, Direction: Input
TransformToIqt-[Information]   Name: EnergyMin, Value: -0.5, Default?: Yes, Direction: Input
TransformToIqt-[Information]   Name: EnergyMax, Value: 0.5, Default?: Yes, Direction: Input
TransformToIqt-[Information]   Name: BinReductionFactor, Value: 10, Default?: Yes, Direction: Input
TransformToIqt-[Information]   Name: NumberOfIterations, Value: 50, Default?: Yes, Direction: Input
TransformToIqt-[Information]   Name: SeedValue, Value: 89631139, Default?: Yes, Direction: Input
TransformToIqt-[Information]   Name: ParameterWorkspace, Value: params, Default?: No, Direction: Output
TransformToIqt-[Information]   Name: OutputWorkspace, Value: iqt, Default?: No, Direction: Output
TransformToIqt-[Information]   Name: DryRun, Value: 0, Default?: Yes, Direction: Input
TransformToIqt-[Information]   Name: CalculateErrors, Value: 1, Default?: Yes, Direction: Input
Python-[Notice] Property deltaE-mode not found

Python-[Notice] Property deltaE-mode not found

Python-[Information] Analyser is graphite, reflection 002
Python-[Warning] Could not get the resolution from the IPF, using 1% of the E Fixed value for the resolution: 0.01845
CreateEmptyTableWorkspace-[Notice] CreateEmptyTableWorkspace started (child)
CreateEmptyTableWorkspace-[Information] Algorithm: CreateEmptyTableWorkspace v1
CreateEmptyTableWorkspace-[Information] Execution Date: 2023-08-24 10:07:23.946779000
CreateEmptyTableWorkspace-[Information] Execution Duration: -1 seconds
CreateEmptyTableWorkspace-[Information] UUID: ccc1f9df-1378-49b2-aa5e-dbb14d1e5618
CreateEmptyTableWorkspace-[Information] Parameters:
CreateEmptyTableWorkspace-[Information]   Name: OutputWorkspace, Value: params, Default?: No, Direction: Output
CreateEmptyTableWorkspace-[Notice] CreateEmptyTableWorkspace successful, Duration 0.00 seconds
Segmentation fault
ninja: build stopped: subcommand failed.

Expected behavior
There should be no segmentation fault, and the usage example should be uncommented.

Platform/Version (please complete the following information):

  • OS: Linux
@robertapplin robertapplin added Bug Issues and pull requests that are regressions or would be considered a bug by users (e.g. crashing) Linux Only Only on Linux ISIS Team: Spectroscopy Issue and pull requests managed by the Spectroscopy subteam at ISIS labels Sep 1, 2023
@robertapplin robertapplin mentioned this issue Sep 1, 2023
Merged
@robertapplin robertapplin self-assigned this Nov 2, 2023
@robertapplin robertapplin mentioned this issue Feb 21, 2024
Merged
@SilkeSchomann SilkeSchomann mentioned this issue Mar 6, 2024
Merged
@robertapplin
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Reopening as this is still an issue

@robertapplin robertapplin reopened this Mar 6, 2024
@robertapplin robertapplin mentioned this issue May 20, 2024
Merged
@robertapplin
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Reopening as this is still an issue

@robertapplin
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Failed with the following in the logs:

Document: algorithms/TransformToIqt-v1
--------------------------------------
Load-[Notice] Load started
InstrumentDefinitionParser-[Warning] Attribute 'mark-as' is a depricated attribute in Instrument Definition File. Please see the deprecated section of docs.mantidproject.org/concepts/InstrumentDefinitionFile for how to remove this warning message
InstrumentDefinitionParser-[Warning] Attribute 'mark-as' is a depricated attribute in Instrument Definition File. Please see the deprecated section of docs.mantidproject.org/concepts/InstrumentDefinitionFile for how to remove this warning message
Load-[Notice] Load successful, Duration 0.03 seconds
Load-[Notice] Load started
Load-[Notice] Load successful, Duration 0.02 seconds
TransformToIqt-[Notice] TransformToIqt started
Python-[Notice] Property deltaE-mode not found

Python-[Notice] Property deltaE-mode not found

Python-[Warning] Could not get the resolution from the IPF, using 1% of the E Fixed value for the resolution: 0.01845
CreateEmptyTableWorkspace-[Notice] CreateEmptyTableWorkspace started (child)
CreateEmptyTableWorkspace-[Notice] CreateEmptyTableWorkspace successful, Duration 0.00 seconds
Segmentation fault

@robertapplin robertapplin reopened this Jun 6, 2024
@robertapplin robertapplin mentioned this issue Jun 6, 2024
Merged
@robertapplin robertapplin mentioned this issue Jul 31, 2024
Merged
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Labels
Bug Issues and pull requests that are regressions or would be considered a bug by users (e.g. crashing) ISIS Team: Spectroscopy Issue and pull requests managed by the Spectroscopy subteam at ISIS Linux Only Only on Linux
Projects
ISIS Spectroscopy
Status: Done v6.11
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@robertapplin