Switch coveralls with codecov

Author: damondpham

.Rbuildignore

@@ -11,4 +11,7 @@
 robdist_new.*\.R
 ^vignettes/vignette_new_RD\.rmd$
 ^doc$
-^Meta$
+^Meta$
+^CRAN-RELEASE$
+^codecov\.yml$
+^\.github$

.github/workflows/test-coverage.yaml

@@ -0,0 +1,30 @@
+# Workflow derived from https://github.com/r-lib/actions/tree/master/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: test-coverage
+
+jobs:
+  test-coverage:
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-r@v1
+        with:
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v1
+        with:
+          extra-packages: covr
+
+      - name: Test coverage
+        run: covr::codecov()
+        shell: Rscript {0}

README.Rmd

@@ -9,7 +9,7 @@ output: github_document
 <!-- badges: start -->
 [![R-CMD-check](https://github.com/mandymejia/fMRIscrub/workflows/R-CMD-check/badge.svg)](https://github.com/mandymejia/fMRIscrub/actions)
 [![AppVeyor build status](https://ci.appveyor.com/api/projects/status/github/mandymejia/fMRIscrub?branch=master&svg=true)](https://ci.appveyor.com/project/mandymejia/fMRIscrub)
-[![Coveralls test coverage](https://coveralls.io/repos/github/mandymejia/fMRIscrub/badge.svg?branch=master)](https://coveralls.io/github/mandymejia/fMRIscrub?branch=master)
+[![Codecov test coverage](https://codecov.io/gh/mandymejia/fMRIscrub/branch/master/graph/badge.svg)](https://app.codecov.io/gh/mandymejia/fMRIscrub?branch=master)
 <!-- badges: end -->
 
 `fMRIscrub` is a collection of routines for data-driven scrubbing (projection scrubbing and DVARS), motion scrubbing, and other fMRI denoising strategies such as anatomical CompCor, detrending, and nuisance regression. The data-driven scrubbing methods are also applicable to other outlier detection tasks involving high-dimensional data.

README.md

@@ -8,8 +8,8 @@
 [![R-CMD-check](https://github.com/mandymejia/fMRIscrub/workflows/R-CMD-check/badge.svg)](https://github.com/mandymejia/fMRIscrub/actions)
 [![AppVeyor build
 status](https://ci.appveyor.com/api/projects/status/github/mandymejia/fMRIscrub?branch=master&svg=true)](https://ci.appveyor.com/project/mandymejia/fMRIscrub)
-[![Coveralls test
-coverage](https://coveralls.io/repos/github/mandymejia/fMRIscrub/badge.svg?branch=master)](https://coveralls.io/github/mandymejia/fMRIscrub?branch=master)
+[![Codecov test
+coverage](https://codecov.io/gh/mandymejia/fMRIscrub/branch/master/graph/badge.svg)](https://app.codecov.io/gh/mandymejia/fMRIscrub?branch=master)
 <!-- badges: end -->
 
 `fMRIscrub` is a collection of routines for data-driven scrubbing

codecov.yml

@@ -0,0 +1,14 @@
+comment: false
+
+coverage:
+  status:
+    project:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true
+    patch:
+      default:
+        target: auto
+        threshold: 1%
+        informational: true