WIP: try using conda.sh to init conda

Author: leehart

env.sh

@@ -4,24 +4,13 @@
 MGENVDIR=$(dirname "${BASH_SOURCE[0]}")
 
 # setup environment variables
+# Note: this also adds "$INSTALLDIR/conda/bin" to $PATH
 echo "[mgenv] setting environmental variables"
 source ${MGENVDIR}/variables.sh
 
-# initialize conda
-echo "[mgenv] initializing conda"
-conda init bash
-
-# reload shell
-echo "[mgenv] reloading shell"
-source $HOME/.bashrc
-
-# list conda environments
-echo "[mgenv] listing conda environments"
-conda env list
-
-# initialize conda
-echo "[mgenv] initializing conda (again)"
-conda init bash
+# activate conda
+echo "[mgenv] activating conda"
+source "$INSTALLDIR/conda/etc/profile.d/conda.sh"
 
 # activate conda environment
 echo "[mgenv] activating environment $CONDANAME"