When and in which order optimize reticulation probs, branch lengths, and model parameters?

[lutteropp]

Turns out the order of {reticulationOpt, brlenOpt, modelOpt}, and when and how often to call it during the search is affecting which moves are getting accepted.

[lutteropp]

Reopened because this is now the most pressing issue: If we do exhaustive {reticulationOpt, brlenOpt, modelOpt}, NetRAX becomes unbearably slow. If we don't do enough, it won't accept any moves...

[stamatak]

slow is not such an issue, we are really interested in the concept here

…

On 12.01.21 11:31, Sarah Lutteropp wrote: Reopened because this is now the most pressing issue: If we do exhaustive {reticulationOpt, brlenOpt, modelOpt}, NetRAX becomes unbearably slow. If we don't do enough, it won't accept any moves... — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#37 (comment)>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAGXB6Q3SH2S47PQR2N7KA3SZQJH7ANCNFSM4V5U4RPQ>.

-- Alexandros (Alexis) Stamatakis Research Group Leader, Heidelberg Institute for Theoretical Studies Full Professor, Dept. of Informatics, Karlsruhe Institute of Technology www.exelixis-lab.org