-
Notifications
You must be signed in to change notification settings - Fork 0
/
template.yml
445 lines (445 loc) · 11.5 KB
/
template.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
kind: Template
apiVersion: template.openshift.io/v1
parameters:
- name: BRANCH
required: true
- name: APP
required: true
value: fin-biodiv-indicators
- name: PAGE_TITLE
required: true
value: "Finnish Biodiversity Indicators"
- name: APP_PORT
required: true
value: "8000"
- name: HEALTH
required: true
value: /healthz
- name: LIVENESS_PERIOD
required: true
value: "30"
- name: FAILURE_THRESHOLD
required: true
value: "5"
- name: READINESS_PERIOD
required: true
value: "5"
- name: DB
required: true
value: postgres
- name: DB_HEALTHCHECK
required: true
value: '[
"sh",
"-c",
"PGPASSWORD=$POSTGRES_PASSWORD
psql -h 0.0.0.0 -U postgres -d postgres -c \"SELECT 1\""
]'
- name: DB_PORT
required: true
value: "5432"
- name: DB_PATH
required: true
value: /var/lib/postgresql/data
- name: DB_DATA
required: true
value: /pgdata
- name: ACCESS_MODE
required: true
value: ReadWriteOnce
- name: STORAGE_CLASS
required: true
value: "standard-csi"
- name: STORAGE
required: true
- name: HOST
required: true
- name: DB_PASSWORD
required: true
- name: FINBIF_ACCESS_TOKEN
required: true
- name: FINBIF_API
required: true
- name: FINBIF_WAREHOUSE_QUERY
required: true
- name: FINBIF_EMAIL
required: true
- name: SMTP_SERVER
required: true
- name: SMTP_PORT
required: true
- name: ERROR_EMAIL_FROM
required: true
- name: OBJECT_STORE
required: true
- name: RCLONE_ACCESS_KEY_ID
required: true
- name: RCLONE_SECRET_ACCESS_KEY
required: true
- name: JOB_SECRET
required: true
- name: MEMORY
required: true
- name: SCHEDULE
required: true
metadata:
name: ${APP}
objects:
- kind: PersistentVolumeClaim
apiVersion: v1
metadata:
name: ${DB}-${BRANCH}
spec:
storageClassName: ${STORAGE_CLASS}
accessModes:
- ${ACCESS_MODE}
resources:
requests:
storage: ${STORAGE}
- kind: ConfigMap
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
data:
branch: ${BRANCH}
db: ${DB}
db_port: ${DB_PORT}
db_host: ${DB}-${BRANCH}
finbif_user_agent: https://github.com/luomus/${APP}:${BRANCH}
finbif_api: ${FINBIF_API}
finbif_warehouse_query: ${FINBIF_WAREHOUSE_QUERY}
finbif_email: ${FINBIF_EMAIL}
- kind: Secret
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
type: Opaque
data:
db_password: ${DB_PASSWORD}
finbif_access_token: ${FINBIF_ACCESS_TOKEN}
rclone_access_key_id: ${RCLONE_ACCESS_KEY_ID}
rclone_secret_access_key: ${RCLONE_SECRET_ACCESS_KEY}
job_secret: ${JOB_SECRET}
- kind: Deployment
apiVersion: apps/v1
metadata:
name: ${APP}-${BRANCH}
labels:
app: ${APP}
spec:
replicas: 1
selector:
matchLabels:
app: ${APP}
strategy:
type: Recreate
template:
metadata:
labels:
app: ${APP}
branch: ${BRANCH}
port: ${APP_PORT}
spec:
containers:
- image: ghcr.io/luomus/${APP}:${BRANCH}
imagePullPolicy: Always
name: ${APP}-${BRANCH}
ports:
- containerPort: ${{APP_PORT}}
volumeMounts:
- mountPath: /home/user/tmp
name: tmp
startupProbe:
httpGet:
path: ${HEALTH}
port: ${{APP_PORT}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
livenessProbe:
httpGet:
path: ${HEALTH}
port: ${{APP_PORT}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
readinessProbe:
httpGet:
path: ${HEALTH}
port: ${{APP_PORT}}
periodSeconds: ${{READINESS_PERIOD}}
env:
- name: PAGE_TITLE
value: ${PAGE_TITLE}
- name: FINBIF_USER_AGENT
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_user_agent
- name: PGUSER
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: PGPASSWORD
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: db_password
- name: PGHOST
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db_host
- name: FINBIF_ACCESS_TOKEN
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: finbif_access_token
- name: FINBIF_API
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_api
- name: FINBIF_WAREHOUSE_QUERY
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_warehouse_query
- name: FINBIF_EMAIL
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_email
- name: JOB_SECRET
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: job_secret
- name: BRANCH
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: branch
- name: SMTP_SERVER
value: ${SMTP_SERVER}
- name: SMTP_PORT
value: ${SMTP_PORT}
- name: ERROR_EMAIL_TO
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_email
- name: ERROR_EMAIL_FROM
value: ${ERROR_EMAIL_FROM}
resources:
limits:
cpu: "500m"
memory: "1Gi"
volumes:
- name: tmp
emptyDir:
medium: Memory
- kind: Deployment
apiVersion: apps/v1
metadata:
name: ${DB}-${BRANCH}
labels:
app: ${APP}
spec:
replicas: 1
selector:
matchLabels:
app: ${APP}
strategy:
type: Recreate
template:
metadata:
labels:
app: ${APP}
branch: ${BRANCH}
port: ${DB_PORT}
spec:
containers:
- image: ghcr.io/luomus/postgis-image:main
imagePullPolicy: Always
name: ${DB}-${BRANCH}
volumeMounts:
- mountPath: ${DB_PATH}
name: ${DB}-${BRANCH}
ports:
- containerPort: ${{DB_PORT}}
startupProbe:
exec:
command: ${{DB_HEALTHCHECK}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
livenessProbe:
exec:
command: ${{DB_HEALTHCHECK}}
failureThreshold: ${{FAILURE_THRESHOLD}}
periodSeconds: ${{LIVENESS_PERIOD}}
readinessProbe:
exec:
command: ${{DB_HEALTHCHECK}}
periodSeconds: ${{READINESS_PERIOD}}
env:
- name: PGDATA
value: ${DB_PATH}${DB_DATA}
- name: POSTGRES_DB
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: POSTGRES_PORT
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db_port
- name: POSTGRES_USER
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: POSTGRES_PASSWORD
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: db_password
resources:
limits:
cpu: "500m"
memory: "1Gi"
volumes:
- name: ${DB}-${BRANCH}
persistentVolumeClaim:
claimName: ${DB}-${BRANCH}
- kind: Service
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
labels:
app: ${APP}
spec:
ports:
- name: ${APP_PORT}
port: ${{APP_PORT}}
targetPort: ${{APP_PORT}}
selector:
app: ${APP}
branch: ${BRANCH}
port: ${APP_PORT}
- kind: Service
apiVersion: v1
metadata:
name: ${DB}-${BRANCH}
labels:
app: ${APP}
spec:
ports:
- name: ${DB_PORT}
port: ${{DB_PORT}}
targetPort: ${{DB_PORT}}
selector:
app: ${APP}
branch: ${BRANCH}
port: ${DB_PORT}
- kind: Route
apiVersion: v1
metadata:
name: ${APP}-${BRANCH}
labels:
app: ${APP}
spec:
host: ${HOST}
port:
targetPort: ${{APP_PORT}}
tls:
insecureEdgeTerminationPolicy: Redirect
to:
kind: Service
name: ${APP}-${BRANCH}
- kind: CronJob
apiVersion: batch/v1
metadata:
name: ${APP}-${BRANCH}
spec:
schedule: ${SCHEDULE}
concurrencyPolicy: Forbid
successfulJobsHistoryLimit: 10
failedJobsHistoryLimit: 10
jobTemplate:
spec:
activeDeadlineSeconds: 7200
backoffLimit: 0
template:
metadata:
labels:
app: ${APP}
spec:
containers:
- image: ghcr.io/luomus/${APP}:${BRANCH}
imagePullPolicy: Always
name: ${APP}-${BRANCH}
command:
- 'Rscript'
- '--vanilla'
- 'update_indices.R'
env:
- name: FINBIF_USER_AGENT
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_user_agent
- name: FINBIF_ACCESS_TOKEN
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: finbif_access_token
- name: FINBIF_API
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_api
- name: FINBIF_WAREHOUSE_QUERY
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_warehouse_query
- name: FINBIF_EMAIL
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: finbif_email
- name: PGUSER
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db
- name: PGPASSWORD
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: db_password
- name: PGHOST
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: db_host
- name: JOB_SECRET
valueFrom:
secretKeyRef:
name: ${APP}-${BRANCH}
key: job_secret
- name: APP_HOSTNAME
value: ${APP}-${BRANCH}
- name: APP_PORT
value: ${APP_PORT}
- name: BRANCH
valueFrom:
configMapKeyRef:
name: ${APP}-${BRANCH}
key: branch
resources:
limits:
cpu: "500m"
memory: ${MEMORY}
restartPolicy: Never