fix readme and main

Author: lillux

README.md

@@ -200,5 +200,5 @@ trj.frames[frame]
 
 This is a dict that contains a dict for each sampled and analyzed frame, with the data computed during the analysis.
 
-### Complete functionality
-An in deep review of morphoscanner functionalities can be found in the [morphoscanner_tutorial.ipynb](https://github.com/lillux/morphoscanner/blob/main/Tutorials/morphoscanner_tutorial.ipynb).
+### Complete functionalities
+An in deep review of `morphoscanner` functionalities can be found in the [morphoscanner tutorial](https://github.com/lillux/morphoscanner/blob/main/Tutorials/1_morphoscanner_tutorial.ipynb).

main.py

@@ -10,26 +10,16 @@
     _xtc = get_xtc()
 
     trj = trajectory(_gro, _xtc)
+    trj.explore()
 
-    print('\nYour trajectory has %d frames' % trj.number_of_frames)
-    print('Your trajectory has %d BB atoms\n' % trj.number_of_BB_atoms)
-    print('Your simulation has the following number of peptides of a certain length:\n')
-    print_peptides_length(trj.len_dict)
+    interval = get_interval(sentence='\nSet the interval between sampled frames (int): ')
+    trj.compose_database(sampling_interval=interval)
 
-    
-    peptide_length = peptide_length(sentence='Set the number of aminoacids in one peptide (int): ')
-    interval = get_interval(sentence='Set the interval between sampled frames (int): ')
-    start_from = start_from(sentence='Set the index from which you want to start.\n\n0 if you have a single simulation.\n0 if you are analyzing split1.\nlen(split1) if you are analyzing split2.\ninteger: ')
-    
-    output_path, file_name = get_destination_dir_and_name()
-    
-    
-    trj.compose_database(peptide_length=peptide_length, interval=interval)
     trj.analyze_inLoop()
     trj.get_data()
     trj.get_database()
 
-    
+    output_path, file_name = get_destination_dir_and_name()
 
     trj.database.to_excel(output_path, sheet_name=file_name)