DESCRIPTION

Package: CaMutQC
Type: Package
Title: An R Package for Comprehensive Filtration and Selection of Cancer Somatic Mutations
Version: 1.0.1
Authors@R: c(person(given = "Xin", family = "Wang", 
                     role = c("aut", "cre"),
                     email = "sylviawang555@gmail.com",
                     comment = c(ORCID = "0000-0002-6072-599X")))
Description: CaMutQC is able to filter false positive mutations generated due to 
    technical issues, as well as to select candidate cancer mutations through a 
    series of well-structured functions by labeling mutations with various flags.
    And a detailed and vivid filter report will be offered after completing 
    a whole filtration or selection section. Also, CaMutQC integrates serveral 
    methods and gene panels for Tumor Mutational Burden (TMB) estimation.  
biocViews: Software, QualityControl, GeneTarget
Encoding: UTF-8
LazyData: false
Suggests: 
    knitr,
    rmarkdown,
    BiocStyle
VignetteBuilder: knitr
RoxygenNote: 7.3.1
NeedsCompilation: no
BugReports: https://github.com/likelet/CaMutQC/issues
URL: https://github.com/likelet/CaMutQC
Depends: R (>= 4.0.0)
Imports: 
    ggplot2,
    dplyr,
    org.Hs.eg.db,
    vcfR,
    clusterProfiler,
    stringr,
    DT,
    MesKit,
    maftools,
    data.table,
    utils,
    stats,
    methods,
    tidyr
License: GPL-3