Version of the python dependencies

[susmarb]

Hello,

I am trying to install the packages in python that are required, but I am getting an error with sci-kit, sometimes is due to incompatibilities with the other packages that are installed without specifying the versions.

Could you please provide the exact versions of the python packages that you have installed?

Thank you.

Best,
Susana

[vclanclos]

Hi, I solved these issues with the following versions:

conda install python==3.8
conda install -c conda-forge numpy==1.22.4
conda install -c conda-forge pandas==1.5.2
conda install -c conda-forge/label/cf202003 scikit-learn==0.22.2.post1
#no joblib needed, its in the scikitlearn install
conda install biopython
conda install requests

[adriangeerre]

Hi,

In my case neither the instructions nor the comment from @vclanclos worked, I run the following:

mamba create -n PlasForest -c bioconda -c conda-forge python=3.6 numpy pandas scikit-learn==0.22.2.post1 requests
conda activate PlasForest
mamba install -c bioconda blast
bash database_downloader.sh

I hope it helps :)