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BasicAPI.cpp
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BasicAPI.cpp
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#include <boost/filesystem.hpp>
#include <sys/stat.h>
#include <dirent.h>
#include "BasicAPI.h"
#include "GCSLAM/ORBSLAM/ORBextractor.h"
#include "Tools/RealSenseInterface.h"
using namespace std;
using namespace cv;
using namespace MultiViewGeometry;
namespace BasicAPI
{
void loadGlobalParameters(GlobalParameters &g_para, std::string para_file)
{
cv::FileStorage fSettings;
fSettings = cv::FileStorage(para_file.c_str(), cv::FileStorage::READ);
g_para.runTestFlag = fSettings["runTestFlag"];
g_para.runRefFrame = fSettings["runRefFrame"];
g_para.runNewFrame = fSettings["runNewFrame"];
g_para.runFrameNum = fSettings["runFrameNum"];
g_para.debug_mode = fSettings["debug_mode"];
g_para.salient_score_threshold = fSettings["salient_score_threshold"];
g_para.minimum_disparity = fSettings["minimum_disparity"];
g_para.ransac_maximum_iterations = fSettings["ransac_maximum_iterations"];
g_para.reprojection_error_3d_threshold = fSettings["reprojection_error_3d_threshold"];
g_para.reprojection_error_2d_threshold = fSettings["reprojection_error_2d_threshold"];
g_para.use_fine_search = fSettings["use_fine_search"];
g_para.maximum_local_frame_match_num = fSettings["maximum_local_frame_match_num"];
g_para.remove_outlier_keyframes = fSettings["remove_outlier_keyframes"];
g_para.keyframe_minimum_distance = fSettings["keyframe_minimum_distance"];
g_para.maximum_keyframe_match_num = fSettings["maximum_keyframe_match_num"];
g_para.save_ply_files = fSettings["save_ply_files"];
g_para.max_feature_num = fSettings["max_feature_num"];
g_para.use_icp_registration = fSettings["use_icp_registration"];
g_para.icp_weight = fSettings["icp_weight"];
g_para.hamming_distance_threshold = fSettings["hamming_distance_threshold"];
g_para.far_plane_distance = fSettings["far_plane_distance"];
}
void saveTrajectoryFrameList(std::vector<Frame> &F,std::string fileName)
{
FILE * fp = fopen(fileName.c_str(), "w+");
if (fp == NULL)
{
std::cerr << "file open error ! " << fileName.c_str() << std::endl;
}
for (int i = 0; i < F.size(); i++)
{
if (F[i].tracking_success && F[i].origin_index == 0)
{
Sophus::SE3d p = F[i].pose_sophus[0];
fprintf(fp, "%.8f %.8f %.8f %.8f %.8f %.8f %.8f %.8f\n",
F[i].time_stamp,
p.translation()(0),
p.translation()(1),
p.translation()(2),
p.unit_quaternion().coeffs().data()[0],
p.unit_quaternion().coeffs().data()[1],
p.unit_quaternion().coeffs().data()[2],
p.unit_quaternion().coeffs().data()[3]);
}
}
fclose(fp);
}
void saveTrajectoryKeyFrameList(std::vector<Frame> &F,std::string fileName)
{
FILE * fp = fopen(fileName.c_str(), "w+");
if (fp == NULL)
{
std::cerr << "file open error ! " << fileName.c_str() << std::endl;
}
for (int i = 0; i < F.size(); i++)
{
if (F[i].tracking_success && F[i].origin_index == 0 && F[i].is_keyframe)
{
Sophus::SE3d p = F[i].pose_sophus[0];
fprintf(fp, "%.8f %.8f %.8f %.8f %.8f %.8f %.8f %.8f\n",
F[i].time_stamp,
p.translation()(0),
p.translation()(1),
p.translation()(2),
p.unit_quaternion().coeffs().data()[0],
p.unit_quaternion().coeffs().data()[1],
p.unit_quaternion().coeffs().data()[2],
p.unit_quaternion().coeffs().data()[3]);
}
}
fclose(fp);
}
void savePLYFiles(std::string fileName,
std::vector<Eigen::Vector3f, Eigen::aligned_allocator<Eigen::Vector3d> > p,
std::vector<Eigen::Vector3i, Eigen::aligned_allocator<Eigen::Vector3d> >color)
{
std::ofstream output_file(fileName.c_str(), std::ios::out | std::ios::trunc);
int pointNum = fmin(p.size(), color.size());
output_file << "ply" << std::endl;
output_file << "format ascii 1.0 { ascii/binary, format version number }" << std::endl;
output_file << "comment made by Greg Turk { comments keyword specified, like all lines }" << std::endl;
output_file << "comment this file is a cube" << std::endl;
output_file << "element vertex " << pointNum << " { define \"vertex\" element, 8 of them in file }" << std::endl;
output_file << "property float x" << std::endl;
output_file << "property float y" << std::endl;
output_file << "property float z" << std::endl;
output_file << "property uchar red" << std::endl;
output_file << "property uchar green" << std::endl;
output_file << "property uchar blue" << std::endl;
output_file << "end_header" << std::endl;
for (int i = 0; i < pointNum; i++)
{
output_file << p[i](0) << " " << p[i](1) << " " << p[i](2) << " "
<< color[i](2) << " " << color[i](1) << " " << color[i](0) << " " << std::endl;
}
output_file.close();
}
void savePLYFrame(std::string fileName, const Frame &f, const CameraPara ¶)
{
std::vector<Eigen::Vector3f, Eigen::aligned_allocator<Eigen::Vector3d> > p;
std::vector<Eigen::Vector3i, Eigen::aligned_allocator<Eigen::Vector3d> >color;
int width = f.depth.cols;
int height = f.depth.rows;
for (int j = 0; j < height; j++)
{
for (int i = 0; i < width; i++)
{
if (f.depth.at<unsigned short>(j, i) > 0)
{
float x, y, z;
x = (i - para.c_cx) / para.c_fx * (f.depth.at<unsigned short>(j, i)) / para.depth_scale;
y = (j - para.c_cy) / para.c_fy * (f.depth.at<unsigned short>(j, i)) / para.depth_scale;
z = f.depth.at<unsigned short>(j, i) / para.depth_scale;
Eigen::Vector3d v = applyPose(f.pose_sophus[0],Eigen::Vector3d(x,y,z));
p.push_back(Eigen::Vector3f(v(0),v(1),v(2)));
color.push_back(Eigen::Vector3i(f.rgb.at<cv::Vec3b>(j, i)[0], f.rgb.at<cv::Vec3b>(j, i)[1], f.rgb.at<cv::Vec3b>(j, i)[2]));
}
}
}
savePLYFiles(fileName,p,color);
}
int detectAndExtractFeatures(Frame &t, int feature_num, CameraPara para)
{
int frame_width = t.rgb.cols;
int frame_height = t.rgb.rows;
clock_t start, end;
start = clock();
cv::Mat feature_desc;
vector<KeyPoint> feature_points;
#if 0
Ptr<ORB> orb = ORB::create();
orb->setMaxFeatures(feature_num);
orb->detectAndCompute(t.rgb, noArray(), feature_points, feature_desc);
#else
ORB_SLAM2::ORBextractor orb(feature_num, 1.2, 8, 20, 7);
Mat grayImage;
cv::cvtColor(t.rgb, grayImage, CV_RGB2GRAY);
orb(grayImage, cv::noArray(), feature_points, feature_desc);
#endif
vector<KeyPoint> undistort_feature_points(feature_points.size());
end = clock();
double time_featureExtraction = (double)(end - start) / CLOCKS_PER_SEC * 1000;
start = clock();
#if 0
// Fill matrix with points
int N = feature_points.size();
cv::Mat mat(N, 2, CV_32F);
for (int i = 0; i<N; i++)
{
mat.at<float>(i, 0) = feature_points[i].pt.x;
mat.at<float>(i, 1) = feature_points[i].pt.y;
}
//distortion for camera 1
cv::Mat DistCoef(5, 1, CV_32F);
DistCoef.at<float>(0) = g_para.d0;
DistCoef.at<float>(1) = g_para.d1;
DistCoef.at<float>(2) = g_para.d2;
DistCoef.at<float>(3) = g_para.d3;
DistCoef.at<float>(4) = g_para.d4;
cv::Mat K = cv::Mat::eye(3, 3, CV_32F);
K.at<float>(0, 0) = para.c_fx;
K.at<float>(1, 1) = para.c_fy;
K.at<float>(0, 2) = para.c_cx;
K.at<float>(1, 2) = para.c_cy;
K.at<float>(2, 2) = 1;
// Undistort points
mat = mat.reshape(2);
cv::undistortPoints(mat, mat, K, DistCoef, cv::Mat(), K);
mat = mat.reshape(1);
// Fill undistorted keypoint vector
undistort_feature_points.resize(N);
for (int i = 0; i<N; i++)
{
cv::KeyPoint kp = feature_points[i];
kp.pt.x = mat.at<float>(i, 0);
kp.pt.y = mat.at<float>(i, 1);
undistort_feature_points[i] = kp;
}
#else
for (int i = 0; i<feature_points.size(); i++)
{
cv::KeyPoint kp = feature_points[i];
undistort_feature_points[i] = kp;
}
#endif
end = clock();
double time_undistortion = (double)(end - start) / CLOCKS_PER_SEC * 1000;
start = clock();
t.keypoints.reserve(feature_points.size());
t.local_points.reserve(feature_points.size());
#if 0
cv::Mat_<float> depth_float_tmp;
cv::Mat_<float> depth_float_tmp_out;
t.depth.convertTo(depth_float_tmp, CV_32F);
cv::bilateralFilter(depth_float_tmp, depth_float_tmp_out, 5, 5, 10); //----
depth_float_tmp_out.convertTo(t.depth, CV_16U);
#endif
for (int i = 0; i < feature_points.size(); i++)
{
feature_points[i].class_id = t.frame_index;
cv::Point2f current_pt = feature_points[i].pt;
float current_depth;
if (current_pt.x > frame_width - 1 || current_pt.y > frame_height - 1 ||
current_pt.x < 0 || current_pt.y < 0)
{
current_depth = -1;
}
else
{
current_depth = t.depth.at<unsigned short>(current_pt.y, current_pt.x) / para.depth_scale;
}
// current no 2D points are considered
if (current_depth > 0 && current_depth < para.maximum_depth)
{
t.keypoints.push_back(undistort_feature_points[i]);
cv::Point2f current_undistort_pt = undistort_feature_points[i].pt;
t.descriptor.push_back(feature_desc.row(i));
t.local_points.push_back(Eigen::Vector3d(
(current_undistort_pt.x - para.c_cx) * current_depth / para.c_fx,
(current_undistort_pt.y - para.c_cy) * current_depth / para.c_fy,
current_depth));
}
}
end = clock();
double time_selectfeatures = (double)(end - start) / CLOCKS_PER_SEC * 1000;
start = clock();
return 1;
}
void refineDepthUseNormal(float *normal, float *depth,
float fx, float fy, float cx, float cy,float width, float height)
{
int numPixels = height * width;
for(int i = 0; i < height; i++)
{
for(int j = 0; j < width; j++)
{
int pos = i * width + j;
Eigen::Vector3f viewAngle = Eigen::Vector3f((j-cx)/fx,(i-cy)/fy,1);
viewAngle.normalize();
Eigen::Vector3f normalAngle = Eigen::Vector3f(normal[pos], normal[pos + numPixels],normal[pos + numPixels * 2]);
float viewQuality = viewAngle.transpose() * normalAngle;
// normal[pos] = viewQuality;
// normal[pos + numPixels] = viewQuality;
// normal[pos + numPixels * 2] = viewQuality;
if(fabs(viewQuality) < 0.3)
{
depth[pos] = 0;
normal[pos] = 0;
normal[pos + numPixels] = 0;
normal[pos + numPixels * 2] = 0;
}
}
}
}
void findCubeCorner(Frame &frame_ref, CameraPara &cameraModel)
{
int width = frame_ref.rgb.cols;
int height = frame_ref.rgb.rows;
const float fx = cameraModel.GetFx();
const float fy = cameraModel.GetFy();
const float cx = cameraModel.GetCx();
const float cy = cameraModel.GetCy();
float * filtered_depth = (float *)frame_ref.refined_depth.data;
Eigen::MatrixXf transform = frame_ref.pose_sophus[0].matrix().block<3, 4>(0, 0).cast<float>();
Eigen::Matrix3f rotation = transform.block<3,3>(0,0);
Eigen::MatrixXf translation = transform.block<3,1>(0,3);
__m256 maxX = _mm256_set1_ps(-1e8);
__m256 maxY = _mm256_set1_ps(-1e8);
__m256 maxZ = _mm256_set1_ps(-1e8);
__m256 minX = _mm256_set1_ps(1e8);
__m256 minY = _mm256_set1_ps(1e8);
__m256 minZ = _mm256_set1_ps(1e8);
vec8 inc = vec8(0,1,2,3,4,5,6,7);
for(int i = 0; i < height; i ++)
{
for(int j = 0; j < width; j+=8)
{
int pos = i * width + j;
vec8 depth_c = _mm256_loadu_ps(&filtered_depth[pos]);
vec8 x = inc + vec8(j);
vec8 y = vec8(i);
vec8 refLocalVertexX = (x - vec8(cx)) / vec8(fx) * depth_c;
vec8 refLocalVertexY = (y - vec8(cy)) / vec8(fy) * depth_c;
vec8 refVX = vec8(rotation(0,0)) * refLocalVertexX + vec8(rotation(0,1)) * refLocalVertexY + vec8(rotation(0,2)) * depth_c + vec8(translation(0));
vec8 refVY = vec8(rotation(1,0)) * refLocalVertexX + vec8(rotation(1,1)) * refLocalVertexY + vec8(rotation(1,2)) * depth_c + vec8(translation(1));
vec8 refVZ = vec8(rotation(2,0)) * refLocalVertexX + vec8(rotation(2,1)) * refLocalVertexY + vec8(rotation(2,2)) * depth_c + vec8(translation(2));
maxX = _mm256_max_ps(refVX.xmm,maxX);
maxY = _mm256_max_ps(refVY.xmm,maxY);
maxZ = _mm256_max_ps(refVZ.xmm,maxZ);
minX = _mm256_min_ps(refVX.xmm,minX);
minY = _mm256_min_ps(refVY.xmm,minY);
minZ = _mm256_min_ps(refVZ.xmm,minZ);
}
}
Eigen::Vector3f maxCorner = Eigen::Vector3f(-1e8,-1e8,-1e8);
Eigen::Vector3f minCorner = Eigen::Vector3f(1e8,1e8,1e8);
for(int i = 0; i < 8; i++ )
{
maxCorner(0) = fmax(maxCorner(0),maxX[i]);
minCorner(0) = fmin(minCorner(0),minX[i]);
maxCorner(1) = fmax(maxCorner(1),maxY[i]);
minCorner(1) = fmin(minCorner(1),minY[i]);
maxCorner(2) = fmax(maxCorner(2),maxX[i]);
minCorner(2) = fmin(minCorner(2),minX[i]);
}
// std::cout << "find frame index: " << frame_ref.frame_index << std::endl;
// std::cout << "max Corner :" << maxCorner<< std::endl;
// std::cout << "min Corner :" << minCorner<< std::endl;
}
void refineNewframesSIMD(Frame &frame_ref, Frame &frame_new,CameraPara &cameraModel)
{
int width = frame_ref.rgb.cols;
int height = frame_ref.rgb.rows;
const float fx = cameraModel.GetFx();
const float fy = cameraModel.GetFy();
const float cx = cameraModel.GetCx();
const float cy = cameraModel.GetCy();
float * filtered_depth_new = (float *)frame_new.refined_depth.data;
float * filtered_depth = (float *)frame_ref.refined_depth.data;
assert(filtered_depth_new != NULL);
assert(filtered_depth != NULL);
float threshold = 0.05;
Eigen::MatrixXf transform_new_to_ref = (frame_ref.pose_sophus[0].inverse()*frame_new.pose_sophus[0]).matrix().block<3, 4>(0, 0).cast<float>();
Eigen::Matrix3f rotation = transform_new_to_ref.block<3,3>(0,0);
Eigen::MatrixXf translation = transform_new_to_ref.block<3,1>(0,3);
vec8 inc = vec8(0,1,2,3,4,5,6,7);
for(int i = 0; i < height; i ++)
{
for(int j = 0; j < width; j+=8)
{
int pos = i * width + j;
vec8 depth_c = _mm256_loadu_ps(&filtered_depth_new[pos]);
vec8 x = inc + vec8(j);
vec8 y = vec8(i);
vec8 refLocalVertexX = (x - vec8(cx)) / vec8(fx) * depth_c;
vec8 refLocalVertexY = (y - vec8(cy)) / vec8(fy) * depth_c;
vec8 refVX = vec8(rotation(0,0)) * refLocalVertexX + vec8(rotation(0,1)) * refLocalVertexY + vec8(rotation(0,2)) * depth_c + vec8(translation(0));
vec8 refVY = vec8(rotation(1,0)) * refLocalVertexX + vec8(rotation(1,1)) * refLocalVertexY + vec8(rotation(1,2)) * depth_c + vec8(translation(1));
vec8 refVZ = vec8(rotation(2,0)) * refLocalVertexX + vec8(rotation(2,1)) * refLocalVertexY + vec8(rotation(2,2)) * depth_c + vec8(translation(2));
vec8 ref_coord_x = refVX / refVZ * vec8(fx) + vec8(cx+0.5);
vec8 ref_coord_y = refVY / refVZ * vec8(fy) + vec8(cy+0.5);
vec8 valid1 = (ref_coord_x > vec8(1)) & (ref_coord_x < vec8(width - 1));
vec8 valid2 = (ref_coord_y > vec8(1)) & (ref_coord_y < vec8(height - 1));
valid1 = valid1 & valid2;
__m256i cameraPos = _mm256_cvtps_epi32((ref_coord_x.floor() + ref_coord_y.floor() * vec8(width)).xmm);
vec8 new_depth = _mm256_mask_i32gather_ps(_mm256_set1_ps(0.0),filtered_depth,cameraPos,(valid1.xmm),4);
valid1 = ((new_depth - refVZ) > (vec8(-threshold) * refVZ)) & ((new_depth - refVZ )< (vec8(threshold) * refVZ));
__m256 filtered_depth_c = _mm256_blendv_ps(_mm256_set1_ps(0),depth_c.xmm,valid1.xmm);
_mm256_storeu_ps(&filtered_depth_new[pos],filtered_depth_c);
}
}
}
//eliminate outliers
void refineNewframes(Frame &frame_ref, Frame &frame_new,CameraPara &cameraModel)
{
int width = frame_ref.rgb.cols;
int height = frame_ref.rgb.rows;
const float fx = cameraModel.GetFx();
const float fy = cameraModel.GetFy();
const float cx = cameraModel.GetCx();
const float cy = cameraModel.GetCy();
float * filtered_depth_new = (float *)frame_new.refined_depth.data;
float * filtered_depth = (float *)frame_ref.refined_depth.data;
assert(filtered_depth_new != NULL);
assert(filtered_depth != NULL);
float depthFar = 10.0f;
float depthNear = 0.01;
Eigen::MatrixXf transform_new_to_ref = (frame_ref.pose_sophus[0].inverse()*frame_new.pose_sophus[0]).matrix().block<3, 4>(0, 0).cast<float>();
Eigen::Matrix3f rotation = transform_new_to_ref.block<3,3>(0,0);
Eigen::MatrixXf translation = transform_new_to_ref.block<3,1>(0,3);
// depth refinement
for(int i = 0; i < height; i ++)
{
for(int j = 0; j < width; j++)
{
int pos = i * width + j;
float depth_c = filtered_depth_new[pos];
if(depth_c > depthFar || depth_c < depthNear )
{
continue;
}
Eigen::Vector3f ref_local_vertex = Eigen::Vector3f((j - cx) / fx, (i - cy) / fy, 1);
Eigen::Vector3f ref_v = rotation * ref_local_vertex * depth_c + translation;
float ref_coord_x = ref_v(0) / ref_v(2) * fx + cx;
float ref_coord_y = ref_v(1) / ref_v(2) * fy + cy;
if(ref_coord_x < 1 || ref_coord_x > width - 1 || ref_coord_y < 1 || ref_coord_y > height - 1)
{
continue;
}
int ulx = floor(ref_coord_x + 0.5);
int uly = floor(ref_coord_y + 0.5);
int ref_pos = uly * width + ulx;
float depth_ul = (filtered_depth[ref_pos]);
if(abs(depth_ul - ref_v(2)) >= 0.03 * ref_v(2) )
{
filtered_depth_new[pos] = 0;
}
}
}
return;
}
void refineKeyframesSIMD(Frame &frame_ref, Frame &frame_new,CameraPara &cameraModel)
{
int width = frame_ref.rgb.cols;
int height = frame_ref.rgb.rows;
float fx = cameraModel.GetFx();
float fy = cameraModel.GetFy();
float cx = cameraModel.GetCx();
float cy = cameraModel.GetCy();
float * filtered_depth_new = (float *)frame_new.refined_depth.data;
float * filtered_depth = (float *)frame_ref.refined_depth.data;
float * vertex_weight = (float * ) frame_ref.weight.data;
float threshold = 0.05;
assert(filtered_depth_new != NULL);
assert(filtered_depth != NULL);
float depthFar = 10.0f;
float depthNear = 0.01;
Eigen::MatrixXd transform_ref_to_new;
transform_ref_to_new = (frame_new.pose_sophus[0].inverse()*frame_ref.pose_sophus[0]).matrix().block<3, 4>(0, 0);
Eigen::Matrix3f rotation = transform_ref_to_new.cast<float>().block<3,3>(0,0);
Eigen::MatrixXf translation = transform_ref_to_new.cast<float>().block<3,1>(0,3);
Eigen::Matrix3f rotationT = rotation.transpose();
// depth refinement
int validPixels = 0;
vec8 inc = vec8(0,1,2,3,4,5,6,7);
for(int i = 0; i < height; i ++)
{
for(int j = 0; j < width; j+=8)
{
int pos = i * width + j;
vec8 depth_c = _mm256_loadu_ps(&filtered_depth[pos]);
vec8 x = inc + vec8(j);
vec8 y = vec8(i);
vec8 refLocalVertexX = (x - vec8(cx)) / vec8(fx) * depth_c;
vec8 refLocalVertexY = (y - vec8(cy)) / vec8(fy) * depth_c;
vec8 refVX = vec8(rotation(0,0)) * refLocalVertexX + vec8(rotation(0,1)) * refLocalVertexY + vec8(rotation(0,2)) * depth_c + vec8(translation(0));
vec8 refVY = vec8(rotation(1,0)) * refLocalVertexX + vec8(rotation(1,1)) * refLocalVertexY + vec8(rotation(1,2)) * depth_c + vec8(translation(1));
vec8 refVZ = vec8(rotation(2,0)) * refLocalVertexX + vec8(rotation(2,1)) * refLocalVertexY + vec8(rotation(2,2)) * depth_c + vec8(translation(2));
vec8 ref_coord_x = refVX / refVZ * vec8(fx) + vec8(cx);
vec8 ref_coord_y = refVY / refVZ * vec8(fy) + vec8(cy);
vec8 valid1 = (ref_coord_x > vec8(2)) & (ref_coord_x < vec8(width - 2));
vec8 valid2 = (ref_coord_y > vec8(2)) & (ref_coord_y < vec8(height - 2));
valid1 = valid1 & valid2;
__m256i cameraPosUL = _mm256_cvtps_epi32((ref_coord_x.floor() + ref_coord_y.floor() * vec8(width)).xmm);
__m256i cameraPosUR = _mm256_add_epi32(cameraPosUL, _mm256_set1_epi32(1));
__m256i cameraPosBL = _mm256_add_epi32(cameraPosUL, _mm256_set1_epi32(width));
__m256i cameraPosBR = _mm256_add_epi32(cameraPosUL, _mm256_set1_epi32(width + 1));
vec8 newDepthUL = _mm256_mask_i32gather_ps(_mm256_set1_ps(0.0),filtered_depth_new,cameraPosUL,(valid1.xmm),4);
vec8 newDepthUR = _mm256_mask_i32gather_ps(_mm256_set1_ps(0.0),filtered_depth_new,cameraPosUR,(valid1.xmm),4);
vec8 newDepthBL = _mm256_mask_i32gather_ps(_mm256_set1_ps(0.0),filtered_depth_new,cameraPosBL,(valid1.xmm),4);
vec8 newDepthBR = _mm256_mask_i32gather_ps(_mm256_set1_ps(0.0),filtered_depth_new,cameraPosBR,(valid1.xmm),4);
vec8 deltaX = ref_coord_x - ref_coord_x.floor();
vec8 deltaY = ref_coord_y - ref_coord_y.floor();
vec8 test = (((newDepthUL - newDepthUR) < vec8(0.1)) & ((newDepthUL - newDepthUR) > vec8(-0.1))
& ((newDepthUL - newDepthBL) < vec8(0.1)) & ((newDepthUL - newDepthBL) > vec8(-0.1))
& ((newDepthUL - newDepthBR) < vec8(0.1)) & ((newDepthUL - newDepthBR) > vec8(-0.1)) );
__m256i cameraPosNearest = _mm256_cvtps_epi32(((ref_coord_x + vec8(0.5)).floor() + (ref_coord_y+ vec8(0.5)).floor() * vec8(width)).xmm);
vec8 newDepthNearest = _mm256_mask_i32gather_ps(_mm256_set1_ps(0.0),filtered_depth,cameraPosNearest,(valid1.xmm),4);
vec8 bilinearDepth = (vec8(1) - vec8(deltaX)) * (vec8(1) - vec8(deltaY)) * newDepthUL +
(vec8(1) - vec8(deltaX)) * (vec8(deltaY)) * newDepthUR +
(vec8(deltaX)) * (vec8(1) - vec8(deltaY)) * newDepthBL +
(vec8(deltaX)) * (vec8(deltaY)) * newDepthBR;
bilinearDepth.xmm = _mm256_blendv_ps(newDepthNearest.xmm,bilinearDepth.xmm,test.xmm);
valid1 = (bilinearDepth - refVZ > vec8(-threshold) * refVZ) & (bilinearDepth - refVZ < vec8(threshold) * refVZ);
vec8 scale = bilinearDepth / refVZ;
refVX = refVX * scale - vec8(translation(0));
refVY = refVY * scale - vec8(translation(1));
refVZ = refVZ * scale - vec8(translation(2));
vec8 vZ = vec8(rotationT(2,0)) * refVX + vec8(rotationT(2,1)) * refVY + vec8(rotationT(2,2)) * refVZ;
vec8 weight = _mm256_loadu_ps(&vertex_weight[pos]);
vec8 filteredDepth = (depth_c * weight + vZ) / (weight + vec8(1));
vec8 filteredWeight = weight + vec8(1);
filteredDepth.xmm = _mm256_blendv_ps(depth_c.xmm,filteredDepth.xmm,valid1.xmm);
filteredWeight.xmm = _mm256_blendv_ps(weight.xmm,filteredWeight.xmm,valid1.xmm);
_mm256_storeu_ps(&filtered_depth[pos],filteredDepth.xmm);
_mm256_storeu_ps(&vertex_weight[pos],filteredWeight.xmm);
}
}
}
void refineKeyframes(Frame &frame_ref, Frame &frame_new,CameraPara &cameraModel)
{
int width = frame_ref.rgb.cols;
int height = frame_ref.rgb.rows;
float fx = cameraModel.GetFx();
float fy = cameraModel.GetFy();
float cx = cameraModel.GetCx();
float cy = cameraModel.GetCy();
float * filtered_depth_new = (float *)frame_new.refined_depth.data;
float * filtered_depth = (float *)frame_ref.refined_depth.data;
float * vertex_weight = (float * ) frame_ref.weight.data;
assert(filtered_depth_new != NULL);
assert(filtered_depth != NULL);
float depthFar = 10.0f;
float depthNear = 0.01;
Eigen::MatrixXd transform_ref_to_new;
transform_ref_to_new = (frame_new.pose_sophus[0].inverse()*frame_ref.pose_sophus[0]).matrix().block<3, 4>(0, 0);
Eigen::Matrix3f rotation = transform_ref_to_new.cast<float>().block<3,3>(0,0);
Eigen::MatrixXf translation = transform_ref_to_new.cast<float>().block<3,1>(0,3);
// depth refinement
int validPixels = 0;
for(int i = 0; i < height; i ++)
{
for(int j = 0; j < width; j++)
{
int pos = i * width + j;
float depth_c = filtered_depth[pos];
if(depth_c > depthFar || depth_c < depthNear )
{
continue;
}
Eigen::Vector3f new_local_vertex = Eigen::Vector3f((j - cx) / fx, (i - cy) / fy, 1);
Eigen::Vector3f new_v = rotation * new_local_vertex * depth_c + translation;
float new_coord_x = new_v(0) / new_v(2) * fx + cx;
float new_coord_y = new_v(1) / new_v(2) * fy + cy;
if(new_coord_x < 1 || new_coord_x > width - 1 || new_coord_y < 1 || new_coord_y > height - 1)
{
continue;
}
int ulx = floor(new_coord_x);
int uly = floor(new_coord_y);
int new_pos = uly * width + ulx;
float depth_ul = (filtered_depth_new[new_pos]);
float depth_ur = (filtered_depth_new[new_pos+1]);
float depth_bl = (filtered_depth_new[new_pos+width]);
float depth_br = (filtered_depth_new[new_pos+width + 1]);
float x = new_coord_x - ulx;
float y = new_coord_y - uly;
float bilinear_depth;
if(abs(depth_ul - depth_ur) < 0.1 && abs(depth_ul - depth_bl) < 0.1 && abs(depth_ul - depth_br) < 0.1 )
{
bilinear_depth = (1-x)*(1-y) * depth_ul + (1-x)*y * depth_ur + x*(1-y) * depth_bl + x*y * depth_br;
}
else
{
bilinear_depth = filtered_depth_new[(int)(floor(new_coord_y + 0.5) * width + floor(new_coord_x + 0.5))];
}
#if 1
float new_depth_observation;
Eigen::Vector3f v(0,0,0);
if(abs(bilinear_depth - new_v(2)) < 0.015 * new_v(2) )
{
new_v = new_v * ( bilinear_depth / new_v(2));
v = rotation.transpose() * ( new_v - translation );
float weight = vertex_weight[pos];
new_depth_observation = (depth_c * weight + v(2)) / (weight + 1) ;
filtered_depth[pos] = new_depth_observation;
vertex_weight[pos]++;
validPixels ++;
}
#endif
}
}
return;
}
void refineDepthUseNormalSIMD(float *normal, float *depth,
float fx, float fy, float cx, float cy,float width, float height)
{
int numPixels = height * width;
vec8 inc = vec8(0,1,2,3,4,5,6,7);
for(int i = 0; i < height; i++)
{
for(int j = 0; j < width; j += 8)
{
vec8 y = vec8(i);
vec8 x = inc + vec8(j);
int pos = i * width + j;
vec8 depth_c = _mm256_loadu_ps(&depth[pos]);
vec8 normalX = _mm256_loadu_ps(&normal[pos]);
vec8 normalY = _mm256_loadu_ps(&normal[pos + numPixels]);
vec8 normalZ = _mm256_loadu_ps(&normal[pos + numPixels * 2]);
vec8 vX = (x - vec8(cx)) / vec8(fx);
vec8 vY = (y - vec8(cy)) / vec8(fy);
vec8 vZ = vec8(1);
vec8 vRSQRT = _mm256_rsqrt_ps((vX * vX + vY * vY + vZ * vZ).xmm);
vX = vX * vRSQRT;
vY = vY * vRSQRT;
vZ = vZ * vRSQRT;
vec8 vQuality = vX * normalX + vY * normalY + vZ * normalZ;
vec8 inValid = vQuality > vec8(-0.1) & vQuality < vec8(0.1);
depth_c = _mm256_blendv_ps(depth_c.xmm,vec8(0.0).xmm,inValid.xmm);
normalX = _mm256_blendv_ps(normalX.xmm,vec8(0.0).xmm,inValid.xmm);
normalY = _mm256_blendv_ps(normalY.xmm,vec8(0.0).xmm,inValid.xmm);
normalZ = _mm256_blendv_ps(normalZ.xmm,vec8(0.0).xmm,inValid.xmm);
_mm256_storeu_ps(&normal[pos],normalX.xmm);
_mm256_storeu_ps(&normal[pos + numPixels],normalY.xmm);
_mm256_storeu_ps(&normal[pos + numPixels * 2],normalZ.xmm);
_mm256_storeu_ps(&depth[pos],depth_c.xmm);
// Eigen::Vector3f viewAngle = Eigen::Vector3f((j-cx)/fx,(i-cy)/fy,1);
// viewAngle.normalize();
// Eigen::Vector3f normalAngle = Eigen::Vector3f(normal[pos], normal[pos + numPixels],normal[pos + numPixels * 2]);
// float viewQuality = viewAngle.transpose() * normalAngle;
// if(fabs(viewQuality) < 0.3)
// {
// depth[pos] = 0;
// normal[pos] = 0;
// normal[pos + numPixels] = 0;
// normal[pos + numPixels * 2] = 0;
// }
}
}
}
// to be made into SIMD
void checkColorQuality(const cv::Mat &normalMap, cv::Mat &validColorFlag,
float fx, float fy, float cx, float cy)
{
validColorFlag.release();
int width = normalMap.cols;
int height = normalMap.rows;
validColorFlag.create(height,width,CV_8U);
float *normal = (float *)normalMap.data;
unsigned char * flag = (unsigned char *)validColorFlag.data;
int totalPixelNum = height * width;
for(int i = 0; i < height; i++)
{
for(int j = 0; j < width ; j++)
{
int pos = i * width + j;
Eigen::Vector3f viewAngle = Eigen::Vector3f((j -cx)/fx,(i-cy)/fy,1);
viewAngle.normalize();
Eigen::Vector3f normalAngle = Eigen::Vector3f(normal[pos], normal[pos + totalPixelNum],normal[pos + totalPixelNum * 2]);
float viewQuality = viewAngle.transpose() * normalAngle;
if(fabs(viewQuality) >= 0.4)
{
flag[pos] = 1;
}
}
}
}
void extractNormalMapSIMD(const cv::Mat &depthMap, cv::Mat &normalMap,
float fx, float fy, float cx, float cy)
{
int width = depthMap.cols;
int height = depthMap.rows;
normalMap.release();
normalMap.create(height,width,CV_32FC3);
float normal_threshold = 0.3;
float * depth = (float *)depthMap.data;
float * normal = (float*) normalMap.data;
int width_dst = width - 1;
int height_dst = height - 1;
vec8 inc = vec8(0,1,2,3,4,5,6,7);
for(unsigned int i = 1; i < height_dst; i++)
{
for(unsigned int j = 1; j < width_dst - 9; j+= 8)
{
vec8 depth_r = _mm256_loadu_ps(&depth[i * width + j + 1]);
vec8 depth_b = _mm256_loadu_ps(&depth[i * width + j + width]);
vec8 depth_l = _mm256_loadu_ps(&depth[i * width + j - 1]);
vec8 depth_t = _mm256_loadu_ps(&depth[i * width + j - width]);
vec8 u1 = ((inc + vec8(j) - vec8(cx)) * (depth_r - depth_l) + depth_r + depth_l) / vec8(fx);
vec8 u2 = vec8(i-cy) * (depth_r - depth_l) / vec8(fy);
vec8 u3 = depth_r - depth_l;
vec8 v1 = (inc + vec8(j) - vec8(cx)) * (depth_b - depth_t) / vec8(fx);
vec8 v2 = (vec8(i-cy) * (depth_b - depth_t) + depth_b + depth_t) / vec8(fy);
vec8 v3 = depth_b - depth_t;
vec8 nX = u2*v3 - u3*v2;
vec8 nY = u3*v1 - u1*v3;
vec8 nZ = u1*v2 - u2*v1;
vec8 nSquare = nX*nX + nY*nY + nZ*nZ;
vec8 valid = (u3 < vec8(normal_threshold)) & (u3 > vec8(-normal_threshold))
& (v3 < vec8(normal_threshold)) & (v3 > vec8(-normal_threshold))
& (nSquare > vec8(1e-24));
vec8 nRSQRT = _mm256_rsqrt_ps(nSquare.xmm);
nX = nX * nRSQRT;
nY = nY * nRSQRT;
nZ = nZ * nRSQRT;
nX = _mm256_blendv_ps(vec8(0.0).xmm,nX.xmm,valid.xmm);
nY = _mm256_blendv_ps(vec8(0.0).xmm,nY.xmm,valid.xmm);
nZ = _mm256_blendv_ps(vec8(0.0).xmm,nZ.xmm,valid.xmm);
_mm256_storeu_ps(&normal[(i*width+j)],nX.xmm);
_mm256_storeu_ps(&normal[(i*width+j) + width * height],nY.xmm);
_mm256_storeu_ps(&normal[(i*width+j) + width * height * 2],nZ.xmm);
}
}
}
void saveRefinedFrame(std::string fileName, const Frame &frame_new, const CameraPara ¶)
{
float fx,fy,cx,cy,width,height;
fx = para.c_fx;
fy = para.c_fy;
cx = para.c_cx;
cy = para.c_cy;
width = para.width;
height = para.height;
std::vector<Eigen::Vector3f, Eigen::aligned_allocator<Eigen::Vector3d> > p;
std::vector<Eigen::Vector3i, Eigen::aligned_allocator<Eigen::Vector3d> > color;
for (int j = 0; j < height; j++)
{
for (int i = 0; i < width; i++)
{
if (frame_new.refined_depth.at<float>(j, i) > 0)
{
float x, y, z;
x = (i - cx) / fx * (frame_new.refined_depth.at<float>(j, i)) ;
y = (j - cy) / fy * (frame_new.refined_depth.at<float>(j, i)) ;
z = frame_new.refined_depth.at<float>(j, i);
Eigen::Vector3d v = applyPose(frame_new.pose_sophus[0],Eigen::Vector3d(x,y,z));
p.push_back(Eigen::Vector3f(v(0),v(1),v(2)));
color.push_back(Eigen::Vector3i(frame_new.rgb.at<cv::Vec3b>(j, i)[0], frame_new.rgb.at<cv::Vec3b>(j, i)[1], frame_new.rgb.at<cv::Vec3b>(j, i)[2]));
}
}
}
savePLYFiles(fileName,p,color);
}
void framePreprocess(Frame &t, MultiViewGeometry::CameraPara &camera)
{
int height = t.depth.rows;
int width = t.depth.cols;
t.refined_depth.create(height,width,CV_32FC1);
t.weight.create(height,width,CV_32FC1);
for(int i = 0; i < height * width ; i++)
{
if(t.depth.at<unsigned short>(i) > camera.maximum_depth * camera.depth_scale)
{
t.depth.at<unsigned short>(i) = 0;
}
t.refined_depth.at<float>(i) = float(t.depth.at<unsigned short>(i)) / camera.depth_scale;
t.weight.at<float>(i) = 0;
}
/***************bilateral filter***************/
#if 1
cv::Mat filteredDepth;
int bilateralFilterRange = 9;
#if MobileCPU
bilateralFilterRange = 7;
#endif
cv::bilateralFilter(t.refined_depth, filteredDepth, bilateralFilterRange, 0.03,4.5);
t.refined_depth = filteredDepth;
/***************remove boundary***************/
float *refined_depth_data = (float *)t.refined_depth.data;
unsigned short *depth_data = (unsigned short*)t.depth.data;
// for(int i = 0; i < height * width; i++)
// {
// if(fabs(refined_depth_data[i] - float(depth_data[i]) / camera.depth_scale) > 0.02)
// {
// refined_depth_data[i] = 0;
// depth_data[i] = 0;
// }
// }
// removeBoundary(t.refined_depth);
#endif
for(int i = 0; i < height * width ; i++)
{
t.depth.at<unsigned short>(i) = t.refined_depth.at<float>(i) * camera.depth_scale;
}
t.depth_scale = camera.depth_scale;
// if(t.frame_index % 10 == 0)
// {
// char fileName[256];
// memset(fileName, 0, 256);
// sprintf(fileName, "output/ply/%d.ply",t.frame_index);
// MultiViewGeometry::saveRefinedFrame(fileName,t,camera);
// }
}
int LoadOnlineOPENNIData(Frame &fc,
LogReader *liveLogReader,
MultiViewGeometry::CameraPara &camera)
{
static int frame_index = 0;
assert(liveLogReader != NULL);
int width = camera.width;
int height = camera.height;
liveLogReader->getNext();
fc.frame_index = frame_index;
frame_index++;
fc.rgb.release();
fc.rgb.create(height,width,CV_8UC3);
memcpy(fc.rgb.data,liveLogReader->rgb,width*height*3);
fc.depth.release();
fc.depth.create(height,width,CV_16UC1);
memcpy(fc.depth.data,liveLogReader->depth,width*height*sizeof(short));
#if 0
char fileName[256];
memset(fileName,0,256);
sprintf(fileName,"output/img/%04d_rgb.png",fc.frame_index);
cv::imwrite(fileName,fc.rgb);
memset(fileName,0,256);
sprintf(fileName,"output/img/%04d_depth.png",fc.frame_index);
cv::imwrite(fileName,fc.depth);
#endif
framePreprocess(fc,camera);
if(fc.frame_index > 10)
{
static_cast<LiveLogReader *>(liveLogReader)->setAuto(0);
}
}
int LoadOnlineRS2Data(Frame &fc,
rs2::pipeline &pipe,
MultiViewGeometry::CameraPara &camera)
{
rs2::pipeline_profile profile = pipe.get_active_profile();
float depth_scale = get_depth_scale(profile.get_device());
rs2::frameset frameset = pipe.wait_for_frames();
auto depth_stream = profile.get_stream(RS2_STREAM_DEPTH);
auto color_stream = profile.get_stream(RS2_STREAM_COLOR);
rs2_extrinsics e = depth_stream.get_extrinsics_to(color_stream);
rs2_intrinsics depthI = depth_stream.as<rs2::video_stream_profile>().get_intrinsics();
rs2_intrinsics colorI = color_stream.as<rs2::video_stream_profile>().get_intrinsics();
Eigen::Matrix3f R;
Eigen::Vector3f t;
R << e.rotation[0],e.rotation[1],e.rotation[2],
e.rotation[3],e.rotation[4],e.rotation[5],
e.rotation[6],e.rotation[7],e.rotation[8];
t << e.translation[0], e.translation[1], e.translation[2];