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Spherized data in cpg0001-jump-pilot is not correctly filtered by plate #151

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Arkkienkeli opened this issue Mar 9, 2025 · 0 comments

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@Arkkienkeli
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Hello,
I was rerunning evaluation pipeline from JUMP paper and also tried spherized features and observed that the files are not properly filtered w.r.t. plate ID.
Example: cpg0000-jump-pilot/source_4/workspace/profiles/2020_11_04_CPJUMP1/BR00117010/BR00117010_spherized.csv.gz has 1536 rows, while
the normalized_feature_select_negcon_batch version has expected 384 rows.

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Turns out, there are in fact profiles of 4 plates. Seems like plates were concatenated in groups for sphering, but were not filtered back.

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