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OMERO.web Docker

A CentOS 7 based Docker image for OMERO.web.

Running the image

To run the Docker image you can set a single OMERO.server to connect to by defining MASTER_ADDR:

docker run -d --name omero-web
    -e MASTER_ADDR=omero.example.org \
    -p 4080:4080 \
    openmicroscopy/omero-web

Alternative all configuration options can be set using environment variables, for example:

docker run -d --name omero-web
    -e CONFIG_omero_web_server__list='[["omero.example.org", 4064, "omero"]]' \
    -e CONFIG_omero_web_debug=true \
    -p 4080:4080 \
    openmicroscopy/omero-web

Configuration

All OMERO configuration properties can be set be defining environment variables CONFIG_omero_property_name=. Since . is not allowed in a variable name . must be replaced by _, and _ by __.

Additional configuration files for OMERO can be provided by mounting files into /opt/omero/web/config/. Files will be loaded with omero load.

See https://github.com/manics/omero-server-docker for more details on configuration.

Default volumes

  • /opt/omero/web/OMERO.web/var: The OMERO.web var directory, including logs

Exposed ports

  • 4080