How to determine this R^2 value?

[Dahn-YoungDong]

LanGen_pipeline_version2/1.1_FILTERING_SNPs.R

Lines 316 to 317 in d98a65e

	#D. Define R² value:
	r2 = 0.4

Hello Jeronymo. Thank you for your previous help.

How did you determine this r2 value? I couldn't find it in the code. Can you share a resource or tutorial ?

[jdalapicolla]

Hello, R2 is the correlation limit for linkage disequilibrium. You can choose any value between 0 and 1, depending on the analyses you like to perform. 0 for filtering only independent SNPs and 1 for allowing SNPs completely linked. *Jeronymo Dalapicolla* Biólogo | Biologist | CRBio 91.859/02-D Instituto Tecnológico Vale | Vale Institute of Technology Desenvolvimento Sustentável | Sustainable Development Rua Boaventura da Silva, 955 - Nazaré, Belém, Pará Phone: +55 (19) 998559340 Skype: @jeronymod CV Lattes <http://lattes.cnpq.br/0831988373556961> GitHub <https://github.com/jdalapicolla> Google Scholar <https://scholar.google.com.br/citations?user=09ArXn4AAAAJ&hl=en> ORCID <https://orcid.org/0000-0002-4819-9720> ResearchGate <https://www.researchgate.net/profile/Jeronymo_Dalapicolla> Publons <http://www.researcherid.com/rid/D-4711-2016> AcademiaEdu <https://independent.academia.edu/JeronymoDalapicolla> LinkedIn <https://www.linkedin.com/in/jeronymo-dalapicolla-3862b16b> Em sex., 4 de dez. de 2020 às 17:10, Dahn-Young Dong < [email protected]> escreveu:

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https://github.com/jdalapicolla/LanGen_pipeline_version2/blob/d98a65e128e810a39b516a9dac40eaae48b856de/1.1_FILTERING_SNPs.R#L316-L317 Hello Jeronymo. Thank you for your previous help. How did you determine this r2 value? I couldn't find it in the code. Can you share a resource or tutorial ? — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#3>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AIGPCMF53CIS2V42LGZLVTLSTE647ANCNFSM4UN4ZNVA> .