context.json

{
    "slug": "beaker_bio",
    "package": "beaker_bio_context.context",
    "class_name": "Context",
    "library_names": [
      "mira"
    ],
    "library_descriptions": [
      "mira is a framework for representing systems using ontology-grounded meta-model templates, and generating various model implementations and exchange formats from these templates. It also implements algorithms for assembling and querying domain knowledge graphs in support of modeling."
    ],
    "library_submodule_descriptions": [
      "mira.dkg - This module contains code for the construction of domain knowledge graphs.",
      "mira.modeling - This module contains code for modeling. The top level contains the Model class, together with the Variable, Transition, and ModelParameter classes, used to represent a Model.",
      "mira.metamodel - This module contains information on code related to meta models.",
      "mira.sources - This module contains code to access models from different sources like json, url, etc..",
      "mira.terarium_client - This module contains code which allows access to the terarium client. A web application for modeling. This module is not to be used.",
      "mira.examples - This module contains examples of how to assemble and modify models in mira."
    ],
    "class_examples": [
      "mira.modeling.triples.Triple"
    ],
    "function_examples": [
      "mira.metamodel.io.model_from_json_file"
    ],
    "class_method_example": [
      "mira.metamodel.template_model.TemplateModel.get_parameters_from_rate_law"
    ],
    "submodule_examples": [
      "mira.modeling"
    ],
    "documentation_query_examples": [
      "'ode model'",
      "'sir model'",
      "'using dkg package'"
    ],
    "task_description": "Modeling and Visualization"
  }