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Feature request: get the intensity distribution of the dataset #34

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fgdfgfthgr-fox opened this issue Jan 1, 2025 · 0 comments
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  • cellmap-data version: 0.1.1.dev49+g226982b
  • Python version: 3.11
  • Operating System: Linux

Description

This is a feature request. It would be easier to design better normalization tactics if we can have access to the intensity distribution of each EM image. Since the images are not normalized by themselves, the current approach is normalising each patch individually but that's not ideal.
For example, for the CellMapImage class, it would be nice if we can have some properties telling us the minimal, maximal, average, or maybe 99% and 1% percentile brightness of the image (that has data).
Thanks.

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