Remove ARPACK and derived functions from julia repo (JuliaLang#27616)

* Remove ARPACK and derived functions from julia repo

* Update docs/Manifest.toml

* fix Pkg tests to not rely on Compat

* Update to latest release of Compat

Author: andreasnoack

.travis.yml

@@ -84,19 +84,18 @@ before_install:
         contrib/travis_fastfail.sh || exit 1;
         brew tap staticfloat/julia > /dev/null;
         brew rm --force $(brew deps --HEAD julia);
-        brew install -v gcc gmp mpfr pcre2 staticfloat/julia/openblas-julia staticfloat/julia/arpack-julia staticfloat/julia/suite-sparse-julia staticfloat/juliadeps/libgfortran;
+        brew install -v gcc gmp mpfr pcre2 staticfloat/julia/openblas-julia staticfloat/julia/suite-sparse-julia staticfloat/juliadeps/libgfortran;
         BUILDOPTS="-j3 USECLANG=1 USECCACHE=1 BINARYBUILDER_TRIPLET=x86_64-apple-darwin14";
         BUILDOPTS="$BUILDOPTS USE_BINARYBUILDER_LLVM=1 LLVM_CONFIG=$TRAVIS_BUILD_DIR/usr/tools/llvm-config LLVM_SIZE=$TRAVIS_BUILD_DIR/usr/tools/llvm-size";
         BUILDOPTS="$BUILDOPTS VERBOSE=1 USE_BLAS64=0 SUITESPARSE_INC=-I$(brew --prefix suite-sparse-julia)/include FORCE_ASSERTIONS=1";
         BUILDOPTS="$BUILDOPTS LIBBLAS=-lopenblas LIBBLASNAME=libopenblas LIBLAPACK=-lopenblas LIBLAPACKNAME=libopenblas";
-        for lib in SUITESPARSE ARPACK BLAS LAPACK GMP MPFR PCRE LIBUNWIND; do
+        for lib in SUITESPARSE BLAS LAPACK GMP MPFR PCRE LIBUNWIND; do
             BUILDOPTS="$BUILDOPTS USE_SYSTEM_$lib=1";
         done;
         export LDFLAGS="-L$(brew --prefix openblas-julia)/lib -L$(brew --prefix suite-sparse-julia)/lib";
         spawn_DYLD_FALLBACK_LIBRARY_PATH="/usr/local/lib:/lib:/usr/lib";
         spawn_DYLD_FALLBACK_LIBRARY_PATH+=":$(brew --prefix openblas-julia)/lib";
         spawn_DYLD_FALLBACK_LIBRARY_PATH+=":$(brew --prefix suite-sparse-julia)/lib";
-        spawn_DYLD_FALLBACK_LIBRARY_PATH+=":$(brew --prefix arpack-julia)/lib";
         export JULIA_MACOS_SPAWN="DYLD_FALLBACK_LIBRARY_PATH=\"$spawn_DYLD_FALLBACK_LIBRARY_PATH\" \$1";
         export BUILDOPTS="$BUILDOPTS spawn=\$(JULIA_MACOS_SPAWN)";
         make $BUILDOPTS -C contrib -f repackage_system_suitesparse4.make;

Make.inc

@@ -38,7 +38,6 @@ USE_SYSTEM_BLAS:=0
 USE_SYSTEM_LAPACK:=0
 USE_SYSTEM_GMP:=0
 USE_SYSTEM_MPFR:=0
-USE_SYSTEM_ARPACK:=0
 USE_SYSTEM_SUITESPARSE:=0
 USE_SYSTEM_LIBUV:=0
 USE_SYSTEM_UTF8PROC:=0
@@ -1075,16 +1074,9 @@ MKLLIB := $(MKLROOT)/lib/ia32
 endif
 USE_SYSTEM_BLAS:=1
 USE_SYSTEM_LAPACK:=1
-ifeq ($(OS), WINNT)
-LIBBLASNAME := mkl_rt
-LIBLAPACKNAME := mkl_rt
-# work around libtool issue with arpack
-MKL_LDFLAGS := -L$(MKLLIB) -Wl,-lmkl_rt
-else
 LIBBLASNAME := libmkl_rt
 LIBLAPACKNAME := libmkl_rt
 MKL_LDFLAGS := -L$(MKLLIB) -lmkl_rt
-endif
 ifneq ($(strip $(MKLLIB)),)
   ifeq ($(OS), Linux)
     RPATH_MKL := -Wl,-rpath,$(MKLLIB)

Makefile

@@ -225,7 +225,6 @@ JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBSSH2) += libssh2
 JL_PRIVATE_LIBS-$(USE_SYSTEM_MBEDTLS) += libmbedtls libmbedcrypto libmbedx509
 JL_PRIVATE_LIBS-$(USE_SYSTEM_CURL) += libcurl
 JL_PRIVATE_LIBS-$(USE_SYSTEM_LIBGIT2) += libgit2
-JL_PRIVATE_LIBS-$(USE_SYSTEM_ARPACK) += libarpack
 ifeq ($(USE_LLVM_SHLIB),1)
 JL_PRIVATE_LIBS-$(USE_SYSTEM_LLVM) += libLLVM
 endif

NEWS.md

@@ -1130,9 +1130,6 @@ Deprecated or removed
     `normalize`, and moved to the new `Unicode` standard library module.
     `graphemes` has also been moved to that module ([#25021]).
 
-  * The functions `eigs` and `svds` have been moved to the `IterativeEigensolvers` standard
-    library module ([#24714]).
-
   * Sparse array functionality has moved to the `SparseArrays` standard library module ([#25249]).
 
   * Linear algebra functionality, and specifically the `LinAlg` module has moved to the
@@ -1272,6 +1269,8 @@ Deprecated or removed
 
   * `atan2` is now a 2-argument method of `atan` ([#27248]).
 
+  * The functions `eigs` and `svds` have been moved to the `Arpack.jl` package ([#27616]).
+
 Command-line option changes
 ---------------------------
 

README.arm.md

@@ -29,13 +29,12 @@ override USE_SYSTEM_LAPACK=1
 override USE_SYSTEM_LIBM=1
 override USE_SYSTEM_GMP=1
 override USE_SYSTEM_MPFR=1
-override USE_SYSTEM_ARPACK=1
 ````
 
 The following command will install all the necessary libraries on Ubuntu:
 
 ````
-sudo apt-get install libblas3gf liblapack3gf libarpack2 libgmp3-dev \
+sudo apt-get install libblas3gf liblapack3gf libgmp3-dev \
                      libmpfr-dev libblas-dev liblapack-dev cmake gcc-4.8 \
                      g++-4.8 gfortran libgfortran3 m4 libedit-dev
 ````

README.md

@@ -309,7 +309,6 @@ Julia uses the following external libraries, which are automatically downloaded
 - **[LAPACK]** (>= 3.5)      — library of linear algebra routines for solving systems of simultaneous linear equations, least-squares solutions of linear systems of equations, eigenvalue problems, and singular value problems.
 - **[MKL]** (optional)       – OpenBLAS and LAPACK may be replaced by Intel's MKL library.
 - **[SuiteSparse]** (>= 4.1) — library of linear algebra routines for sparse matrices (see [note below](#suitesparse)).
-- **[ARPACK]**               — collection of subroutines designed to solve large, sparse eigenvalue problems.
 - **[PCRE]** (>= 10.00)      — Perl-compatible regular expressions library.
 - **[GMP]** (>= 5.0)         — GNU multiple precision arithmetic library, needed for `BigInt` support.
 - **[MPFR]** (>= 3.0)        — GNU multiple precision floating point library, needed for arbitrary precision floating point (`BigFloat`) support.
@@ -339,7 +338,6 @@ Julia uses the following external libraries, which are automatically downloaded
 [LAPACK]:       http://www.netlib.org/lapack
 [MKL]:          http://software.intel.com/en-us/articles/intel-mkl
 [SuiteSparse]:  http://faculty.cse.tamu.edu/davis/suitesparse.html
-[ARPACK]:       http://forge.scilab.org/index.php/p/arpack-ng
 [PCRE]:         http://www.pcre.org
 [LLVM]:         http://www.llvm.org
 [FemtoLisp]:    https://github.com/JeffBezanson/femtolisp

base/Makefile

@@ -180,7 +180,6 @@ $(eval $(call symlink_system_library,$(LIBLAPACKNAME),LAPACK))
 endif
 $(eval $(call symlink_system_library,libgmp,GMP))
 $(eval $(call symlink_system_library,libmpfr,MPFR))
-$(eval $(call symlink_system_library,libarpack,ARPACK))
 $(eval $(call symlink_system_library,libmbedtls,MBEDTLS))
 $(eval $(call symlink_system_library,libssh2,LIBSSH2))
 $(eval $(call symlink_system_library,libcurl,CURL))

base/deprecated.jl

@@ -1720,6 +1720,8 @@ end
 
 @deprecate atan2(y, x) atan(y, x)
 
+@deprecate_moved eigs "Arpack"
+@deprecate_moved svds "Arpack"
 
 # END 0.7 deprecations
 

base/sysimg.jl

@@ -520,7 +520,6 @@ let
             :Future,
             :OldPkg,
             :LinearAlgebra,
-            :IterativeEigensolvers,
             :SparseArrays,
             :SuiteSparse,
             :SharedArrays,
@@ -647,9 +646,6 @@ end
     @eval @deprecate_stdlib $(Symbol("@dateformat_str")) Dates true
     @deprecate_stdlib now Dates true
 
-    @deprecate_stdlib eigs IterativeEigensolvers true
-    @deprecate_stdlib svds IterativeEigensolvers true
-
     @eval @deprecate_stdlib $(Symbol("@printf")) Printf true
     @eval @deprecate_stdlib $(Symbol("@sprintf")) Printf true
 

contrib/fixup-libgfortran.sh

@@ -29,11 +29,6 @@ fi
 
 private_libdir=$1
 
-if [ ! -f "$private_libdir/libarpack.$SHLIB_EXT" ]; then
-    echo "ERROR: Could not open $private_libdir/libarpack.$SHLIB_EXT" >&2
-    exit 2
-fi
-
 find_shlib()
 {
     lib_path="$1"
@@ -52,7 +47,7 @@ private_libname()
 }
 
 # First, discover all the places where libgfortran/libgcc is, as well as their true SONAMES
-for lib in arpack lapack; do
+for lib in lapack; do
     if [ -f "$private_libdir/lib$lib.$SHLIB_EXT" ]; then
         # Find the paths to the libraries we're interested in.  These are almost
         # always within the same directory, but we like to be general.
@@ -125,11 +120,11 @@ change_linkage()
 }
 
 # For every library that remotely touches libgfortran stuff (the libraries we
-# have copied in ourselves as well as arpack, etc...) we must
+# have copied in ourselves) we must
 # update the linkage to point to @rpath (on OSX) or $ORIGIN (on Linux) so
 # that direct links to the old libgfortran directories are instead directed
 # to the proper location, which is our $private_libdir.
-for lib in libopenblas libarpack libcholmod liblapack $SONAMES; do
+for lib in libopenblas libcholmod liblapack $SONAMES; do
     # Grab every incarnation of that library that exists within $private_libdir
     # (e.g. "libopenblas.so", and "libopenblas.so.0", etc...)
     for lib_path in $private_libdir/$lib*; do