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remove version numbers in URIs, regenerate html
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‎docs/biology_sampledfeature_extension.html‎

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‎docs/biology_sampledfeature_extension.md‎

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‎testoutput/biology_sampledfeature_extension.json‎

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{
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"https://w3id.org/isample/vocabulary/sampledfeature/1.0/biologicalentity": {
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"https://w3id.org/isample/vocabulary/sampledfeature/biologicalentity": {
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"label": {
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"en": "Biological entity"
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},
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"children": [
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/eukaryote": {
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"https://w3id.org/isample/biology/biosampledfeature/eukaryote": {
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"label": {
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"en": "Eukaryote"
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},
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"children": [
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/Animalia": {
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"https://w3id.org/isample/biology/biosampledfeature/Animalia": {
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"label": {
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"en": "Animalia"
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},
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"children": [
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/Vertebrate": {
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"https://w3id.org/isample/biology/biosampledfeature/Vertebrate": {
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"label": {
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"en": "Vertebrate"
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},
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"children": [
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/amphibian": {
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"https://w3id.org/isample/biology/biosampledfeature/amphibian": {
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"label": {
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"en": "Amphibian"
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},
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"children": []
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/bird": {
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"https://w3id.org/isample/biology/biosampledfeature/bird": {
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"label": {
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"en": "Bird"
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},
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"children": []
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/fish": {
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"https://w3id.org/isample/biology/biosampledfeature/fish": {
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"label": {
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"en": "Fish"
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},
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"children": []
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/mammal": {
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"https://w3id.org/isample/biology/biosampledfeature/mammal": {
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"label": {
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"en": "Mammal"
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"children": []
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/reptile": {
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"https://w3id.org/isample/biology/biosampledfeature/reptile": {
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"label": {
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"en": "Reptile"
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},
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/arthropod": {
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"https://w3id.org/isample/biology/biosampledfeature/arthropod": {
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"label": {
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"en": "Arthropod"
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},
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"children": [
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/arachnid": {
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"https://w3id.org/isample/biology/biosampledfeature/arachnid": {
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"label": {
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"en": "Arachnid"
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},
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"children": []
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/crustacea": {
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"https://w3id.org/isample/biology/biosampledfeature/crustacea": {
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"label": {
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"en": "Crustaceans"
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},
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"children": []
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/hexapoda": {
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"https://w3id.org/isample/biology/biosampledfeature/hexapoda": {
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"label": {
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"en": "Insect"
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},
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"children": []
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/myriapod": {
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"https://w3id.org/isample/biology/biosampledfeature/myriapod": {
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"label": {
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"en": "Myriapod"
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"children": []
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/otherarthropod": {
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"https://w3id.org/isample/biology/biosampledfeature/otherarthropod": {
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"label": {
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"en": "Other arthropod"
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/mollusca": {
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"https://w3id.org/isample/biology/biosampledfeature/mollusca": {
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"label": {
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"en": "Mollusca"
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"children": []
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/otherinvertebrate": {
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"https://w3id.org/isample/biology/biosampledfeature/otherinvertebrate": {
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"label": {
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"en": "Other invertebrate"
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},
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"children": []
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/porifera": {
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"https://w3id.org/isample/biology/biosampledfeature/porifera": {
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"label": {
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"en": "Porifera"
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/Fungi": {
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"https://w3id.org/isample/biology/biosampledfeature/Fungi": {
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"label": {
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"en": "Fungi"
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"children": [
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/macrofungi": {
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"https://w3id.org/isample/biology/biosampledfeature/macrofungi": {
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"label": {
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"en": "Macrofungi"
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"children": []
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/microfungi": {
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"https://w3id.org/isample/biology/biosampledfeature/microfungi": {
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"en": "Microfungi"
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/Plantae": {
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"https://w3id.org/isample/biology/biosampledfeature/Plantae": {
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"label": {
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"en": "Plantae"
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"children": [
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/bryophyte": {
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"https://w3id.org/isample/biology/biosampledfeature/bryophyte": {
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"label": {
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"en": "Bryophyte"
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"children": []
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/otherplant": {
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"https://w3id.org/isample/biology/biosampledfeature/otherplant": {
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"label": {
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"en": "Other plant"
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},
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"children": []
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}
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/pteridophyte": {
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"https://w3id.org/isample/biology/biosampledfeature/pteridophyte": {
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"label": {
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"en": "Pteridophyte"
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"children": []
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},
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"https://w3id.org/isample/biology/biosampledfeature/1.0/spermatophyte": {
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"https://w3id.org/isample/biology/biosampledfeature/spermatophyte": {
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"label": {
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"en": "Seed plant"
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}
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},
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"https://w3id.org/isample/biology/biosampledfeature/1.0/Protista": {
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"https://w3id.org/isample/biology/biosampledfeature/Protista": {
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"label": {
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"en": "Protista"
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"children": [
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{
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"en": "Amoebozoa"
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/myxomycete": {
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"https://w3id.org/isample/biology/biosampledfeature/myxomycete": {
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"label": {
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"en": "Myxomycetes"
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},
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/protozoa": {
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"https://w3id.org/isample/biology/biosampledfeature/protozoa": {
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"label": {
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"en": "Protozoa"
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}
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},
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{
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"https://w3id.org/isample/biology/biosampledfeature/1.0/algae": {
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"https://w3id.org/isample/biology/biosampledfeature/algae": {
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"label": {
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"en": "Algae"
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"children": []
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{
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"https://w3id.org/isample/biology/biosampledfeature/eukaryoticmicroorganisms": {
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"label": {
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"en": "Eukaryotic microorganisms"
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}
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},
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"https://w3id.org/isample/biology/biosampledfeature/lichen": {
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"label": {
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"en": "Lichen"
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},
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"children": []
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}
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{
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"en": "Plasmid"
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"children": []
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"https://w3id.org/isample/biology/biosampledfeature/prokaryote": {
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"label": {
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"https://w3id.org/isample/biology/biosampledfeature/1.0/archaea": {
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"https://w3id.org/isample/biology/biosampledfeature/archaea": {
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"https://w3id.org/isample/biology/biosampledfeature/bacteria": {
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"https://w3id.org/isample/biology/biosampledfeature/1.0/virus": {
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"https://w3id.org/isample/biology/biosampledfeature/virus": {
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"https://w3id.org/isample/biology/biosampledfeature/phage": {
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‎testoutput/biology_sampledfeature_extension.md‎

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This is a vocabulary to categorize sampled organisms (whole or part) according to taxonomic classes. Classes are based largely on taxonomy found in Wikipedia, particularly Whittaker's five kingdom system (1969) (https://en.wikipedia.org/wiki/Kingdom_(biology), https://doi.org/10.1126%2Fscience.163.3863.150). The intended use is in iSamples cross domain categorization of material samples, recognizing that there are multiple view for taxonaomy and cladistist for the tree of life. This is a high level view intended for cross domain purposes, not expert analysis. Other extension vocablaries should be used for other taxonomic schemes
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[`https://w3id.org/isample/biology/biosampledfeature/1.0/biologicentityvocabulary`](https://w3id.org/isample/biology/biosampledfeature/1.0/biologicentityvocabulary)
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[`https://w3id.org/isample/biology/biosampledfeature/biologicentityvocabulary`](https://w3id.org/isample/biology/biosampledfeature/biologicentityvocabulary)
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‎tools/__pycache__/vocab.cpython-311.pyc‎

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‎tools/__pycache__/vocab2mdCacheV2.cpython-311.pyc‎

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