NAMESPACE_deprec

# Generated by roxygen2: do not edit by hand

export(calcPlotDendrogram_plotly)
export(calcPlotHeatmapLegend)
export(castListEntries)
export(data.numericmatrix)
export(metaboliteFamilyVersusClass)
export(mzClustGeneric)
export(parsePeakAbundanceMatrixQF)
export(processMS1data)
export(readClusterDataFromProjectFile)
export(readMSDial)
export(readMetaboscape)
export(readProjectData)
export(runMetFamily)
importFrom(QFeatures,QFeatures)
importFrom(S4Vectors,DataFrame)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,rainbow)
importFrom(grDevices,rgb)
importFrom(openxlsx2,read_xlsx)


## Hardcoded:
exportPattern("^[^\\.]")
import(egg)
import(shiny)
importFrom("grDevices", "as.raster", "rainbow", "rgb")
importFrom("methods", "as")
importFrom("graphics", "axis", "mtext", "par", "plot.new",
           "plot.window", "points", "rasterImage", "rect", "segments",
           "title")
importFrom("methods", "as", "is")
importFrom("stats", "as.dendrogram", "cor", "dendrapply", "dist",
           "hclust", "is.leaf", "median", "na.omit", "predict", "sd")
importFrom("utils", "flush.console", "read.table", "read.delim")

importFrom(SummarizedExperiment,colData)
importFrom("SummarizedExperiment","rowData","rowData<-")
importFrom(SummarizedExperiment,assay)

importFrom("plotly", "plot_ly", "add_trace", "layout")
importFrom("stringr", "str_squish", "str_split")