.schema.yaml

---
type: map
mapping:
    "install_repository_dependencies":
        type: bool
        default: false
    "install_resolver_dependencies":
        type: bool
        default: false
    "install_tool_dependencies":
        type: bool
        default: false
    "tools":
        type: seq
        sequence:
            - type: map
              mapping:
                "name":
                    type: str
                    required: true
                "owner":
                    type: str
                    required: true
                "tool_panel_section_label":
                    type: str
                    enum: [
                        'Get Data', 'Send Data', 'Collection Operations', 'Expression Tools', 'Data and Metadata Management',
                        'Text Manipulation', 'Filter and Sort', 'Join, Subtract and Group',
                        'Convert Formats', 'FASTA/FASTQ', 'FASTQ Quality Control', 'SAM/BAM', 'BED',
                        'VCF/BCF', 'Nanopore', 'Operate on Genomic Intervals', 'Fetch Sequences / Alignments',
                        'Annotation', 'Ontology', 'Assembly', 'Mapping', 'Variant Calling', 'Genome editing',
                        'RNA-Seq', 'Peak Calling', 'Epigenetics', 'Phylogenetics', 'Phenotype Association',
                        'Single-cell', 'Get scRNAseq data', 'Seurat', 'SC3', 'Scanpy', 'Monocl3', 'SCMap',
                        'SCCAF', 'Single Cell Utils and Viz', 'Picard', 'deepTools', 'Gemini', 'EMBOSS',
                        'GATK Tools', 'NCBI Blast', 'HiCExplorer', 'RAD-seq', 'GraphClust' , 'MiModD',
                        'Metagenomic Analysis', 'Qiime' , 'Mothur' , 'DNA Metabarcoding' , 'Proteomics', 'Metabolomics',
                        'ChemicalToolBox', 'Statistics', 'Graph/Display Data' , 'Evolution', 'Motif Tools', "Machine Learning",
                        'Test Tools', 'GIS Data Handling', 'Animal Detection on Acoustic Recordings', 'Compute indicators for satellite remote sensing', 'Imaging', 'Virology',
                        'Regional Variation' , 'Genome Diversity' , 'Deprecated', 'Interactive tools', 'Apollo', 'Quality Control',
                        'Multiple Alignments', 'Climate Analysis', 'RNA Analysis', 'Data Managers', 'Extract Features', 'Other Tools',
                        'Species abundance', 'Biodiversity data exploration', 'Sanger Sequencing', 'Spatial Omics', 'Muon Spectroscopy',
                        'Compute indicators for turnover boulders fields', 'QIIME 2', 'Astronomy', 'Ecoregionalization', 'Indicators from geometric mean',
                        'XAS (X-ray Absorption Spectroscopy)'
                    ]
                "tool_panel_section_id":
                    type: str
                    enum: [
                        "get_data", "send_data", "collection_operations", "expression_tools", "text_manipulation", "data_and_metadata_management",
                        "filter_and_sort", "join__subtract_and_group", "convert_formats", "fasta_fastq", "fastq_quality_control",
                        "sam_bam", "bed", "vcf_bcf", "nanopore", "operate_on_genomic_intervals", "fetch_sequences___alignments",
                        "annotation", "ontology", "assembly", "mapping", "variant_calling", "genome_editing", "rna_seq",
                        "peak_calling", "epigenetics", "phylogenetics", "phenotype_association", "single-cell",
                        "hca_sc_get-scrna", "hca_sc_seurat_tools", "hca_sc_sc3_tools", "hca_sc_scanpy_tools", "qiime_2",
                        "hca_sc_label_analysis_tools", "hca_sc_garnett_tools", "hca_sc_scpred_tools", "hca_sc_scater_tools", "machine_learning",
                        "hca_sc_monocle3_tools", "hca_sc_scmap_tools", "hca_sc_sccaf_tools", "hca_sc_utils_viz", "picard", "compute_indicators_for_satellite_remote_sensing",
                        "deeptools", "gemini", "emboss", "gatk_tools", "ncbi_blast", "hicexplorer", "rad_seq", "graphclust",
                        "mimodd", "metagenomic_analysis", "qiime", "mothur", "dna_metabarcoding" , "proteomics", "metabolomics", "chemicaltoolbox",
                        "statistics", "graph_display_data", "evolution", "motif_tools", "test_tools", "gis_data_handling", "quality_control",
                        "animal_detection_on_acoustic_recordings", "regional_variation", "genome_diversity", 'apollo', 'imaging', 'virology',
                        "deprecated", "interactivetools", "multiple_alignments", "climate_analysis", "rna_analysis", "species_abundance", 
                        "biodiversity_data_exploration", "sanger_sequencing", "spatial_omics", "muon_spectroscopy", "compute_indicators_for_turnover_boulders_fields",
                        "astronomy", "ecoregionalization", "geom_mean", "xas"
                    ]