Fixed include order and removed the filter from cpplint

Author: manpen

CPPLINT.cfg

@@ -1 +1 @@
-filter=-legal/copyright,-whitespace/braces,-whitespace/newline,-build/c++11,-whitespace/line_length,-whitespace/indent,-runtime/references,-whitespace/comments,-runtime/int,-build/header_guard,-whitespace/operators,-readability/braces,-readability/casting,-readability/todo
+filter=-legal/copyright,-whitespace/braces,-whitespace/newline,-build/c++11,-whitespace/line_length,-whitespace/indent,-runtime/references,-whitespace/comments,-runtime/int,-build/header_guard,-whitespace/operators,-readability/braces,-readability/casting,-readability/todo,-build/include_order

examples/applications/skew3-lcp.cpp

@@ -17,6 +17,20 @@
  *  http://www.boost.org/LICENSE_1_0.txt)
  **************************************************************************/
 
+#include <cassert>
+#include <cmath>
+
+#include <algorithm>
+#include <fstream>
+#include <iomanip>
+#include <iostream>
+#include <iterator>
+#include <limits>
+#include <numeric>
+#include <sstream>
+#include <string>
+#include <vector>
+
 #include <foxxll/common/uint_types.hpp>
 #include <foxxll/common/utils.hpp>
 #include <foxxll/io.hpp>
@@ -29,18 +43,6 @@
 #include <stxxl/timer>
 #include <stxxl/vector>
 
-#include <algorithm>
-#include <cassert>
-#include <cmath>
-#include <fstream>
-#include <iomanip>
-#include <iostream>
-#include <iterator>
-#include <limits>
-#include <numeric>
-#include <sstream>
-#include <string>
-#include <vector>
 
 using foxxll::external_size_type;
 

examples/applications/skew3.cpp

@@ -17,25 +17,26 @@
  *  http://www.boost.org/LICENSE_1_0.txt)
  **************************************************************************/
 
-#include <foxxll/common/uint_types.hpp>
-#include <foxxll/io.hpp>
-#include <stxxl/algorithm>
-#include <stxxl/bits/common/cmdline.h>
-#include <stxxl/random>
-#include <stxxl/sorter>
-#include <stxxl/stream>
-#include <stxxl/vector>
-
-#include <algorithm>
 #include <cassert>
 #include <cctype>
 #include <cstddef>
 #include <cstdlib>
+
+#include <algorithm>
 #include <iostream>
 #include <limits>
 #include <string>
 #include <vector>
 
+#include <foxxll/common/uint_types.hpp>
+#include <foxxll/io.hpp>
+#include <stxxl/algorithm>
+#include <stxxl/bits/common/cmdline.h>
+#include <stxxl/random>
+#include <stxxl/sorter>
+#include <stxxl/stream>
+#include <stxxl/vector>
+
 using foxxll::external_size_type;
 namespace stream = stxxl::stream;
 

examples/containers/sequence1.cpp

@@ -12,6 +12,7 @@
 
 //! [example]
 #include <iostream>
+
 #include <stxxl/sequence>
 
 int main()

examples/containers/stack1.cpp

@@ -11,6 +11,7 @@
  **************************************************************************/
 
 //! [example]
+#include <cassert>
 #include <stxxl/stack>
 
 int main()

examples/containers/unordered_map1.cpp

@@ -13,6 +13,7 @@
 
 //! [example]
 #include <iostream>
+
 #include <stxxl/unordered_map>
 
 //! [hash]

examples/containers/vector1.cpp

@@ -12,6 +12,7 @@
 
 //! [example]
 #include <iostream>
+
 #include <stxxl/vector>
 
 int main()

include/stxxl/bits/algo/ksort.h

@@ -29,6 +29,7 @@
 #include <foxxll/mng/block_manager.hpp>
 #include <foxxll/mng/block_prefetcher.hpp>
 #include <foxxll/mng/buf_writer.hpp>
+
 #include <stxxl/bits/algo/bid_adapter.h>
 #include <stxxl/bits/algo/inmemsort.h>
 #include <stxxl/bits/algo/intksort.h>

include/stxxl/bits/algo/losertree.h

@@ -15,6 +15,8 @@
 #ifndef STXXL_ALGO_LOSERTREE_HEADER
 #define STXXL_ALGO_LOSERTREE_HEADER
 
+#include <algorithm>
+
 #include <foxxll/common/types.hpp>
 #include <foxxll/common/utils.hpp>
 
@@ -24,8 +26,6 @@
 #include <stxxl/types>
 #include <tlx/math/integer_log2.hpp>
 
-#include <algorithm>
-
 namespace stxxl {
 
 template <typename RunCursorType,

include/stxxl/bits/algo/run_cursor.h

@@ -14,13 +14,13 @@
 #ifndef STXXL_ALGO_RUN_CURSOR_HEADER
 #define STXXL_ALGO_RUN_CURSOR_HEADER
 
+#include <cassert>
+#include <cstdlib>
+
 #include <tlx/define.hpp>
 
 #include <foxxll/common/types.hpp>
 
-#include <cassert>
-#include <cstdlib>
-
 namespace stxxl {
 
 template <typename BlockType>