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report.txt
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All statistics are based on contigs of size >= 500 bp, unless otherwise noted (e.g., "# contigs (>= 0 bp)" and "Total length (>= 0 bp)" include all contigs).
Assembly SRR13577846_1.asm.bp.a_ctg SRR13577846_1.asm.bp.p_ctg SRR13577846_1.asm.bp.p_utg SRR13577846_1.asm.bp.r_utg
# contigs (>= 0 bp) 7 53 97 109
# contigs (>= 1000 bp) 7 53 97 109
# contigs (>= 5000 bp) 7 53 97 109
# contigs (>= 10000 bp) 6 53 96 107
# contigs (>= 25000 bp) 0 20 29 29
# contigs (>= 50000 bp) 0 17 25 26
Total length (>= 0 bp) 98753 12772529 13240714 13359236
Total length (>= 1000 bp) 98753 12772529 13240714 13359236
Total length (>= 5000 bp) 98753 12772529 13240714 13359236
Total length (>= 10000 bp) 89312 12772529 13231273 13339862
Total length (>= 25000 bp) 0 12204376 12162686 12124881
Total length (>= 50000 bp) 0 12121907 12041020 12029204
# contigs 7 53 97 109
Largest contig 20743 1506376 1285368 1285368
Total length 98753 12772529 13240714 13359236
Reference length 12157105 12157105 12157105 12157105
GC (%) 40.43 38.41 38.40 38.40
Reference GC (%) 38.15 38.15 38.15 38.15
N50 13846 809047 647873 647873
NG50 - 809047 674164 674164
N90 10759 350316 107490 103314
NG90 - 441569 234961 234961
auN 15108.9 818225.5 641917.7 627458.9
auNG 122.7 859646.2 699134.3 689503.9
L50 3 6 8 8
LG50 - 6 7 7
L90 6 15 24 26
LG90 - 14 18 18
# misassemblies 3 121 132 135
# misassembled contigs 3 44 65 69
Misassembled contigs length 34046 12630657 11882327 11802878
# local misassemblies 0 36 39 39
# scaffold gap ext. mis. 0 0 0 0
# scaffold gap loc. mis. 0 0 0 0
# unaligned mis. contigs 0 0 0 0
# unaligned contigs 0 + 1 part 1 + 17 part 1 + 25 part 1 + 25 part
Unaligned length 1294 112206 112191 112191
Genome fraction (%) 0.699 97.420 97.445 97.475
Duplication ratio 1.134 1.068 1.107 1.116
# N's per 100 kbp 0.00 0.00 0.00 0.00
# mismatches per 100 kbp 284.24 205.70 208.18 206.76
# indels per 100 kbp 45.64 28.05 29.40 29.35
Largest alignment 20743 843303 765504 765504
Total aligned length 96398 12650381 13112224 13230212
NA50 12389 273893 220852 220852
NGA50 - 284119 250704 250704
NA90 7727 65917 17198 16609
NGA90 - 109892 107862 106924
auNA 13350.5 356505.7 300261.3 297232.9
auNGA 108.4 374552.9 327024.7 326624.1
LA50 3 13 17 17
LGA50 - 12 14 14
LA90 7 47 69 76
LGA90 - 40 45 45