Doc suggestion

[wsnoble]

I'm reading the quickstart, and one minor thing that I think would be very helpful is if this documentation mentioned, for each option, what the default value is if you don't specify it.

[wsnoble]

Also, FYI, this sentence is hard to understand because split-sequences is not mentioned elsewhere in the quick-start: " Therefore, it is best to combine –minibatch-fraction with –split-sequences. "

[wsnoble]

After further searching the docs, I can't find any explanation of what split-sequences does or what value it takes. Can someone please explain this?

[EricR86]

--split-sequences puts an upper limit on the size of the windows used for training and inference in base-pairs. The default is 2000000 bp.

For more details see:
https://segway.readthedocs.io/en/latest/technical.html#memory-usage

The defaults for all options are both in the --help command line output as well in the command-line usage summary portion of the docs.

[ChelseyLin3]

Does the original resolution of genomedata have any impact on the --split-sequences function?

[EricR86]

No there is no inherent "resolution" for Genomedata. --split-sequences effectively will split at base-pair boundaries regardless of whatever underlying resolution the dataset originates from.

[ChelseyLin3]

Thank you!