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setup.py
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setup.py
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from setuptools import setup, find_packages
from codecs import open
from os import path
here = path.abspath(path.dirname(__file__))
with open(path.join(here, "README.rst"), encoding="utf-8") as f:
long_description = f.read()
requires = [
"torch",
"numpy",
"pandas",
"psutil",
"threadpoolctl",
"scikit-learn>=0.23",
"importlib_metadata>=0.7; python_version < '3.8'",
]
setup(
name="imbalance-harmony-pytorch",
use_scm_version=True,
description="Pytorch implementation of Harmony algorithm on single-cell sequencing data integration",
long_description=long_description,
url="https://github.com/lilab-bcb/harmony-pytorch",
author="Yiming Yang, Bo Li",
author_email="[email protected], [email protected]",
classifiers=[ # https://pypi.python.org/pypi?%3Aaction=list_classifiers
"Development Status :: 3 - Alpha",
"Intended Audience :: Developers",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: BSD License",
"Natural Language :: English",
"Operating System :: MacOS",
"Operating System :: Microsoft :: Windows :: Windows 10",
"Operating System :: POSIX :: Linux",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3 :: Only",
"Topic :: Software Development :: Build Tools",
"Topic :: Scientific/Engineering :: Bio-Informatics",
],
keywords="single-cell genomics data integration",
packages=find_packages(),
install_requires=requires,
setup_requires=["setuptools_scm"],
python_requires="~=3.5",
)