gene search

[wang748]

Dear Developer, Can I use TOGA to find out the missing and added genes in the query sequence relative to the reference sequence?If so, which result file should I look at?

[MichaelHiller]

This is probably the wrong github (CESAR, not TOGA), but I don't really understand the question.
TOGA will tell you which genes are likely lost (inactivated) or missing (assembly gap).
It will also detect duplications of genes present in your reference annotation.

Hope that helps