.gitignore

.DS_Store
semantic.cache
bin/

*.tmp
*.tmp.obo
*.tmp.owl
*.tmp.json

.github/token.txt

src/ontology/mirror
src/ontology/mirror/*
src/ontology/reports/*
!src/ontology/reports/release-diff.md
src/ontology/*.properties
src/ontology/seed.txt
src/ontology/dosdp-tools.log
src/ontology/ed_definitions_merged.owl
src/ontology/ontologyterms.txt
src/ontology/simple_seed.txt
src/ontology/patterns
src/ontology/merged-hed-edit.owl

src/ontology/target/
src/ontology/tmp/*
!src/ontology/tmp/.gitkeep
!src/ontology/tmp/README.md

src/ontology/run.sh.conf
src/ontology/run.sh.env

src/ontology/imports/*_terms_combined.txt

src/patterns/data/**/*.ofn
src/patterns/data/**/*.txt
src/patterns/pattern_owl_seed.txt
src/patterns/all_pattern_terms.txt


#################
## Eclipse
#################

*.pydevproject
.project
.metadata
bin/
tmp/
*.tmp
*.bak
*.swp
*~.nib
local.properties
.classpath
.settings/
.loadpath

# External tool builders
.externalToolBuilders/

# Locally stored "Eclipse launch configurations"
*.launch

# CDT-specific
.cproject

# PDT-specific
.buildpath


#################
## Matlab
#################
*.asv


#################
## Python
#################
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]

# C extensions
*.so

# Distribution / packaging
.Python
env/
bin/
build/
develop-eggs/
dist/
eggs/
lib/
lib64/
parts/
sdist/
var/
*.egg-info/
.installed.cfg
*.egg
tests/scratch

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
cover/


# Translations
*.mo

# Mr Developer
.mr.developer.cfg
.project
.pydevproject

# Rope
.ropeproject

# Django stuff:
*.log
*.pot

# Sphinx documentation
docs/_build/

#machine specific files
.vimrc

# Pycharm
.idea/
/venv/
config.py

############
## Windows
############

# Windows image file caches
Thumbs.db

# Folder config file
Desktop.ini

# Project specific
schema_cache_test/
hed_cache/