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For certain sequences, I am finding that the native conformation that is returned by lattice.native_conf(seq) is not found in the output of lattice.confs.k_lowest_confs(seq, lattice.temp, 5). I am under the impression that the native conformation should be the 0th item returned by lattice.confs.k_lowest_confs, so please let me know if I am mistaken.
seq_length=16temperature=1lattice=lp.LatticeThermodynamics.from_length(seq_length, temperature)
# Fold sequenceseq="PQHKIFGKQMHKTETF"printlattice.native_conf(seq)
printlattice.confs.k_lowest_confs(seq, lattice.temp, 5) # Native conf not found
For certain sequences, I am finding that the native conformation that is returned by
lattice.native_conf(seq)
is not found in the output oflattice.confs.k_lowest_confs(seq, lattice.temp, 5)
. I am under the impression that the native conformation should be the 0th item returned bylattice.confs.k_lowest_confs
, so please let me know if I am mistaken.For other sequences, this seems to hold:
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