remove old logic

Author: Zsailer

latticegpm/gpm.py

@@ -2,7 +2,7 @@
 
 # use space enumeration
 from gpmap.gpm import GenotypePhenotypeMap
-from gpmap.utils import mutations_to_genotypes, binary_mutations_map
+from gpmap.utils import mutations_to_genotypes
 
 # ------------------------------------------------------
 # Build a binary protein lattice model sequence space
@@ -96,12 +96,6 @@ def __init__(self, wildtype,
             mutations=mutations
         )
 
-    @classmethod
-    def read_mutant(cls, s1, s2, **kwargs):
-        """Build Lattice GPM """
-        mutations = binary_mutations_map(s1, s2)
-        return cls(s1, mutations, **kwargs)
-
     @property
     def phenotype_type(self):
         return self._phenotype_type
@@ -114,6 +108,6 @@ def phenotype_type(self, phenotype_type):
     def print_sequences(self, sequences):
         """ Print sequence conformation with/without ligand bound. """
         # Get the sequence to conformation mapping from `seqspace` machinery.
-        seq2conf = self.get_map("genotypes", "confs")
+        seq2conf = self.map("genotypes", "confs")
         for s in sequences:
             PrintConformation(s, seq2conf[s])