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data_dictionary.yml
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data_dictionary.yml
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dictionary_last_modified: 2023-04-18
fields:
- name: ID
type: string
description: >
Unique ID of the case
required: true
- name: Pathogen
type: string
description: >
Constant, pre-filled value, pathogen of interest
required: true
- name: Case_status
type: confirmed | probable | suspected | discarded | omit_error
description: >
Status of a case. Cases which are discarded were previously
suspected but have now been confirmed negative, and should
be excluded from case counts. Cases which are omit_error were
incorrectly added and should be dismissed from any data
interpretation.
required: true
- name: Location_Province
type: string
description: Province where case was reported
examples: [Litoral, Kie-Ntem]
- name: Location_District
type: string
description: District where case was reported
examples: [Bata, Ebibeyin]
- name: Country
type: string
description: Country where case was reported
required: true
examples: [England, United States, Spain, Australia]
- name: Country_ISO3
type: string
description: ISO 3166-1 alpha-3, three letter country codes
required: true
examples: [ITA, GBR, ESP, BOL]
- name: Age
type: integer-range
description: Age of the individual, specified as a range, either open-ended (<n, >n) or as a range delimited by a hyphen (m-n) following 5-year age increments (m-n)
- name: Gender
type: male | female | other
description: Gender of the individual
- name: Healthcare_worker
type: Y | N
description: Whether individual is healthcare worker
- name: Occupation
type: string
description: Free response entry describing the individual's occupation
- name: Date_onset
type: iso8601date
description: Date of onset of symptoms
- name: Date_onset_estimated
type: iso8601date
description: >
Estimated date of onset of symptoms. Where date of onset is not
available, it is estimated from the date of first consult/hospitalisation
or date of death, by shifting the value by the delay distribution mean
- name: Confirmation_method
type: string
description: Test used to confirm diagnosis
examples: ["RT-PCR"]
- name: Outcome
type: recovered | alive | death | NK
description: Optional field that specifies outcome of the disease, NK=Not known
- name: Date_death
type: iso8601date
description: Date of death
- name: Date_recovered
type: iso8601date
description: Date of recovery
- name: Contact_with_case
type: Y | N | NK
Description: Has the individual had contact with a confirmed/ probable/ suspected case (Y=Yes, N=No, NK=Not known)?
- name: Source
type: url
description: URL of news story or government source where this case was confirmed
required: true
- name: Source_II
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Source_III
type: url
description: URL of news story or government source where this case was confirmed (archived or secondary source)
- name: Date_entry
type: iso8601date
description: Date case was entered into line list
required: true
- name: Date_last_modified
type: iso8601date
description: Last date when case was modified in line list
required: true
- name: Data_up_to
type: iso8601date
description: Line list data is upto this date
required: true