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environment.yaml
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name: nanopore
channels:
- bioconda
- conda-forge
- frgfm
- nvidia
- pkgs/main
- pytorch
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_kmp_llvm
- alsa-lib=1.2.8=h166bdaf_0
- ansi2html=1.8.0=py310hff52083_2
- appdirs=1.4.4=pyh9f0ad1d_0
- asttokens=2.2.1=pyhd8ed1ab_0
- attr=2.5.1=h166bdaf_1
- attrs=23.1.0=pyh71513ae_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- backports.tarfile=1.2.0=pyhd8ed1ab_0
- blas=1.0=mkl
- blinker=1.6.3=pyhd8ed1ab_0
- boltons=23.0.0=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_9
- brotli-bin=1.0.9=h166bdaf_9
- brotlipy=0.7.0=py310h7f8727e_1002
- bwa=0.7.17=he4a0461_11
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cachecontrol=0.14.1=pyhd8ed1ab_0
- cachecontrol-with-filecache=0.14.1=pyhd8ed1ab_0
- cachy=0.3.0=pyhd8ed1ab_1
- cairo=1.16.0=ha61ee94_1014
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.15.1=py310h5eee18b_3
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=8.1.3=unix_pyhd8ed1ab_2
- click-default-group=1.2.4=pyhd8ed1ab_0
- clikit=0.6.2=pyhd8ed1ab_2
- colorama=0.4.6=pyhd8ed1ab_0
- conda=23.3.1=py310hff52083_0
- conda-lock=2.5.7=pyhd8ed1ab_0
- conda-package-handling=2.0.2=pyh38be061_0
- conda-package-streaming=0.7.0=pyhd8ed1ab_1
- contourpy=1.1.0=py310hd41b1e2_0
- crashtest=0.4.1=pyhd8ed1ab_0
- cryptography=41.0.4=py310h75e40e8_0
- cuda-cudart=11.8.89=0
- cuda-cupti=11.8.87=0
- cuda-libraries=11.8.0=0
- cuda-nvrtc=11.8.89=0
- cuda-nvtx=11.8.86=0
- cuda-runtime=11.8.0=0
- curl=8.1.2=h409715c_0
- cycler=0.11.0=pyhd8ed1ab_0
- dash=2.14.0=pyhd8ed1ab_0
- dash-core-components=2.0.0=pyhd8ed1ab_1
- dash-daq=0.5.0=pyh9f0ad1d_1
- dash-html-components=2.0.0=pyhd8ed1ab_1
- dbus=1.13.6=h5008d03_3
- decorator=5.1.1=pyhd8ed1ab_0
- distlib=0.3.9=pyhd8ed1ab_0
- ensureconda=1.4.4=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- ffmpeg=4.3=hf484d3e_0
- fftw=3.3.10=nompi_hc118613_108
- filelock=3.9.0=py310h06a4308_0
- fmt=9.1.0=h924138e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.42.0=py310h2372a71_0
- freetype=2.12.1=h4a9f257_0
- gettext=0.21.1=h27087fc_0
- giflib=5.2.1=h5eee18b_3
- gitdb=4.0.11=pyhd8ed1ab_0
- gitpython=3.1.43=pyhd8ed1ab_0
- glib=2.78.0=hfc55251_0
- glib-tools=2.78.0=hfc55251_0
- gmp=6.2.1=h295c915_3
- gmpy2=2.1.2=py310heeb90bb_0
- gnutls=3.6.15=he1e5248_0
- graphite2=1.3.13=h58526e2_1001
- gst-plugins-base=1.22.0=h4243ec0_2
- gstreamer=1.22.0=h25f0c4b_2
- gstreamer-orc=0.4.34=hd590300_0
- harfbuzz=6.0.0=h8e241bc_0
- html5lib=1.1=pyhd8ed1ab_1
- htslib=1.3.1=h0cf4675_7
- icu=70.1=h27087fc_0
- idna=3.4=py310h06a4308_0
- importlib-metadata=5.0.0=pyha770c72_1
- importlib_resources=5.10.0=pyhd8ed1ab_0
- intel-openmp=2023.1.0=hdb19cb5_46305
- itsdangerous=2.1.2=pyhd8ed1ab_0
- jack=1.9.22=h11f4161_0
- jaraco.classes=3.4.0=pyhd8ed1ab_1
- jaraco.context=5.3.0=pyhd8ed1ab_1
- jaraco.functools=4.0.0=pyhd8ed1ab_0
- jeepney=0.8.0=pyhd8ed1ab_0
- jinja2=3.1.2=py310h06a4308_0
- jpeg=9e=h5eee18b_1
- jsonpatch=1.32=pyhd8ed1ab_0
- jsonpointer=2.0=py_0
- jsonschema=4.17.0=pyhd8ed1ab_0
- keyring=25.5.0=pyha804496_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py310hbf28c38_1
- krb5=1.20.1=h81ceb04_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_1
- lerc=4.0.0=h27087fc_0
- libabseil=20230125.3=cxx17_h59595ed_0
- libarchive=3.6.2=h3d51595_0
- libbrotlicommon=1.0.9=h166bdaf_9
- libbrotlidec=1.0.9=h166bdaf_9
- libbrotlienc=1.0.9=h166bdaf_9
- libcap=2.67=he9d0100_0
- libclang=15.0.7=default_h7634d5b_3
- libclang13=15.0.7=default_h9986a30_3
- libcublas=11.11.3.6=0
- libcufft=10.9.0.58=0
- libcufile=1.6.1.9=0
- libcups=2.3.3=h36d4200_3
- libcurand=10.3.2.106=0
- libcurl=8.1.2=h409715c_0
- libcusolver=11.4.1.48=0
- libcusparse=11.7.5.86=0
- libdb=6.2.32=h9c3ff4c_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=h28343ad_4
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.4=h6a678d5_0
- libflac=1.4.3=h59595ed_0
- libgcc-ng=12.2.0=h65d4601_19
- libgcrypt=1.10.1=h166bdaf_0
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libglib=2.78.0=hebfc3b9_0
- libgpg-error=1.47=h71f35ed_0
- libiconv=1.17=h166bdaf_0
- libidn2=2.3.2=h7f8727e_0
- libllvm14=14.0.6=hcd5def8_4
- libllvm15=15.0.7=hadd5161_1
- libmamba=1.4.9=h658169a_0
- libmambapy=1.4.9=py310h8aae740_0
- libnghttp2=1.52.0=h61bc06f_0
- libnpp=11.8.0.86=0
- libnsl=2.0.0=h7f98852_0
- libnvjpeg=11.9.0.86=0
- libogg=1.3.4=h7f98852_1
- libopus=1.3.1=h7f98852_1
- libpng=1.6.39=h5eee18b_0
- libpq=15.3=hbcd7760_1
- libprotobuf=4.23.3=hd1fb520_0
- libsndfile=1.2.2=hc60ed4a_1
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.25=hfc55251_0
- libsqlite=3.42.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-ng=12.2.0=h46fd767_19
- libsystemd0=253=h8c4010b_1
- libtasn1=4.19.0=h5eee18b_0
- libtiff=4.4.0=h0e0dad5_3
- libtool=2.4.7=h27087fc_0
- libudev1=253=h0b41bf4_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=2.38.1=h0b41bf4_0
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h5eee18b_1
- libxcb=1.13=h7f98852_1004
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.10.3=hca2bb57_4
- libzlib=1.2.13=h166bdaf_4
- llvm-openmp=16.0.4=h4dfa4b3_0
- lz4-c=1.9.4=h6a678d5_0
- lzo=2.10=h516909a_1000
- mamba=1.4.9=py310h51d5547_0
- markupsafe=2.1.1=py310h7f8727e_0
- matplotlib=3.7.2=py310hff52083_0
- matplotlib-base=3.7.2=py310hf38f957_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mkl=2023.1.0=h6d00ec8_46342
- mkl-service=2.4.0=py310h5eee18b_1
- mkl_fft=1.3.6=py310h1128e8f_1
- mkl_random=1.2.2=py310h1128e8f_1
- more-itertools=10.5.0=pyhd8ed1ab_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.2=hb69a4c5_1
- mpg123=1.32.3=h59595ed_0
- msgpack-python=1.0.8=py310h25c7140_0
- munkres=1.1.4=pyh9f0ad1d_0
- mysql-common=8.0.33=hf1915f5_5
- mysql-libs=8.0.33=hca2cd23_5
- natsort=8.4.0=pyhd8ed1ab_0
- nbformat=5.7.0=pyhd8ed1ab_0
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- nettle=3.7.3=hbbd107a_1
- networkx=2.8.4=py310h06a4308_1
- nspr=4.35=h27087fc_0
- nss=3.89=he45b914_0
- numpy=1.24.3=py310h5f9d8c6_1
- numpy-base=1.24.3=py310hb5e798b_1
- openh264=2.1.1=h4ff587b_0
- openssl=3.1.3=hd590300_0
- packaging=23.1=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- pastel=0.2.1=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=4_hd590300_perl5
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pillow=9.4.0=py310h6a678d5_0
- pip=23.0.1=py310h06a4308_0
- pixman=0.42.2=h59595ed_0
- pkginfo=1.11.2=pyhd8ed1ab_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.5.1=pyhd8ed1ab_0
- plotly=5.17.0=pyhd8ed1ab_0
- pluggy=1.0.0=pyhd8ed1ab_5
- ply=3.11=py_1
- portaudio=19.6.0=h583fa2b_7
- protobuf=4.23.3=py310hb875b13_0
- pthread-stubs=0.4=h36c2ea0_1001
- ptyprocess=0.7.0=pyhd3deb0d_0
- pulseaudio=16.1=hcb278e6_3
- pulseaudio-client=16.1=h5195f5e_3
- pulseaudio-daemon=16.1=ha8d29e2_3
- pure_eval=0.2.2=pyhd8ed1ab_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.4=py310h5764c6d_1
- pycparser=2.21=pyhd3eb1b0_0
- pydantic=1.10.17=py310h5b4e0ec_0
- pyfastx=1.1.0=py310h83093d7_3
- pylev=1.4.0=pyhd8ed1ab_0
- pyopenssl=23.2.0=pyhd8ed1ab_1
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyqt=5.15.7=py310hab646b1_3
- pyqt5-sip=12.11.0=py310heca2aa9_3
- pyrsistent=0.19.2=py310h5764c6d_0
- pysocks=1.7.1=py310h06a4308_0
- python=3.10.12=hd12c33a_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.2=pyhd8ed1ab_0
- python_abi=3.10=3_cp310
- pytorch=2.0.1=py3.10_cuda11.8_cudnn8.7.0_0
- pytorch-cuda=11.8=h7e8668a_5
- pytorch-mutex=1.0=cuda
- pyyaml=6.0.2=py310h5b4e0ec_0
- qt-main=5.15.8=h5d23da1_6
- readline=8.2=h5eee18b_0
- reproc=14.2.4=h0b41bf4_0
- reproc-cpp=14.2.4=hcb278e6_0
- requests=2.31.0=pyhd8ed1ab_0
- retrying=1.3.3=py_2
- ruamel.yaml=0.17.26=py310h2372a71_0
- ruamel.yaml.clib=0.2.7=py310h1fa729e_1
- samtools=1.6=hc3601fc_10
- secretstorage=3.3.3=py310hff52083_3
- seqkit=2.5.1=h9ee0642_0
- setuptools=66.0.0=py310h06a4308_0
- sip=6.7.11=py310hc6cd4ac_0
- six=1.16.0=pyh6c4a22f_0
- smmap=5.0.0=pyhd8ed1ab_0
- sqlite=3.41.2=h5eee18b_0
- sympy=1.11.1=py310h06a4308_0
- tbb=2021.8.0=hdb19cb5_0
- tenacity=8.1.0=pyhd8ed1ab_0
- tensorboardx=2.6.1=pyhd8ed1ab_0
- tk=8.6.12=h1ccaba5_0
- toml=0.10.2=pyhd8ed1ab_0
- tomli=2.0.1=pyhd8ed1ab_0
- tomlkit=0.13.2=pyha770c72_0
- toolz=0.12.0=pyhd8ed1ab_0
- torchaudio=2.0.2=py310_cu118
- torchcam=0.3.1=0
- torchtriton=2.0.0=py310
- torchvision=0.15.2=py310_cu118
- tornado=6.3.2=py310h2372a71_0
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.5.0=py310h06a4308_0
- typing_extensions=4.5.0=py310h06a4308_0
- tzdata=2023c=h71feb2d_0
- unicodedata2=15.0.0=py310h5764c6d_0
- urllib3=1.26.15=py310h06a4308_0
- virtualenv=20.21.1=pyhd8ed1ab_0
- webencodings=0.5.1=pyhd8ed1ab_2
- wheel=0.38.4=py310h06a4308_0
- xcb-util=0.4.0=h516909a_0
- xcb-util-image=0.4.0=h166bdaf_0
- xcb-util-keysyms=0.4.0=h516909a_0
- xcb-util-renderutil=0.3.9=h166bdaf_0
- xcb-util-wm=0.4.1=h516909a_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.10=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h27087fc_2
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.10.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstandard=0.19.0=py310hdeb6495_1
- zstd=1.5.5=hc292b87_0