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‎syllabus.md

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@@ -19,7 +19,7 @@ Please see [last year's syllabus](http://cbb752b23.gersteinlab.org/syllabus) (wi
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| 1/29 | DATA - Genomics II | 25d2 | <span style="color:silver">23d2</span> | | [25d2](http://files2.gersteinlab.org/public-docs/2025/02.10/CBB752_25d2.pdf) |
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| 2/3 | DATA - Knowledge Representation & Databases | 25d5 | <span style="color:silver">23d5</span> | | [25d5](http://files2.gersteinlab.org/public-docs/2025/02.10/CBB752_25d5.pdf) |
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| 2/5 | MINING - Personal Genomes + Seq. Comparison | 25i2b,25m3 | <span style="color:silver"> 23i2b,23m3</span> | | |
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| 2/10 | MINING - Seq. Comparison (con't) + Multi-seq Alignment + Fast Alignment | <span> 25m3, 25m4, 25m5 </span> | <span style="color:silver">23m3, 23m4, 23m5 </span> | | [2512b](http://files2.gersteinlab.org/public-docs/2025/02.13/25i2b.pdf),[25m3-part1](http://files2.gersteinlab.org/public-docs/2025/02.13/25m3-part1.pdf) |
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| 2/10 | MINING - Seq. Comparison (con't) + Multi-seq Alignment + Fast Alignment | 25m3, 25m4, 25m5 | <span style="color:silver">23m3, 23m4, 23m5 </span> | | [2512b](http://files2.gersteinlab.org/public-docs/2025/02.13/25i2b.pdf),[25m3-part1](http://files2.gersteinlab.org/public-docs/2025/02.13/25m3-part1.pdf) |
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| 2/12 | MINING - Variant Calling (incl. a focused section on SVs)+ Basic Multi-Omics | 25m6a，25m6b, 25m7-pt1 | <span style="color:silver">23m6a, 23m6b,23m7</span> | | |
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| 2/17 | Quiz on 1st Half | [quiz1 study guide](https://files.gersteinlab.org/public-docs/2025/02.12/quiz1_study_guide.pdf) | | | |
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| 2/19 | MINING - Basic Multi-Omics(con't) + Supervised Mining #1 | 25m7-pt2, 25m8a, 25m8b | <span style="color:silver">23m7,23m8a,23m8b</span> | | |
@@ -80,7 +80,6 @@ Please see [last year's syllabus](http://cbb752b23.gersteinlab.org/syllabus) (wi
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| 25m9a | Unsupervised Data Mining - Clustering | [x](https://files.gersteinlab.org/public-docs/2025/03.03/cbb752-25m9a-ML-unsupervised-clustering.pdf) | [x](https://files.gersteinlab.org/public-docs/2025/03.03/cbb752-25m9a-ML-unsupervised-clustering.pptx)| [](https://youtu.be/9hDw_aLzSPw)[M9a](https://youtu.be/9hDw_aLzSPw) | [M9a](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-15mar21.9a.Unsupervised-mining-clustering.onweb.mp4) |
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| 25m9c | Unsupervised Data Mining - SVD | [x](https://files.gersteinlab.org/public-docs/2025/03.03/cbb752-25m9c--ML-unsupervised-SVD-core.pdf) | [x](https://files.gersteinlab.org/public-docs/2025/03.03/cbb752-25m9c--ML-unsupervised-SVD-core.pptx) | [](https://youtu.be/UdtzKBp8VH0)[M9c](https://youtu.be/UdtzKBp8VH0) | [](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-17mar21.09c-SVD.onweb.mp4)[25m9c](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m9c--ML-unsupervised-SVD-core.mp4)|
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| 25m9d | Unsupervised Data Mining - SVD extensions | | | [](https://youtu.be/dX_LVKsCee0)[M9d](https://youtu.be/dX_LVKsCee0) | [M9d](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-17mar21.09d-datamining-unsupervised--rca-cca.onweb.mp4) |
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| 25m9e | Single Cell Analysis | [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m9e-singlecell.pptx) | [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m9e-singlecell.pdf) | | [](http://files2.gersteinlab.org/public-docs/2023/02.22/23m9e--cbb752-MG-spr23-singlecell.mp4)[23m9e](http://files2.gersteinlab.org/public-docs/2023/02.22/23m9e--cbb752-MG-spr23-singlecell.mp4) |
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| 25t1 | Single Cell part 2 | | | | [](http://files.gersteinlab.org/public-docs/2023/04.27/DB_lecture.mp4)[23t1](http://files.gersteinlab.org/public-docs/2023/04.27/DB_lecture.mp4) |
@@ -90,7 +89,6 @@ Please see [last year's syllabus](http://cbb752b23.gersteinlab.org/syllabus) (wi
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| 25m10a | Networks - Intro | [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10a-networks-intro.pptx)| [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10a-networks-intro.pdf) | [](https://youtu.be/KIEjigOPoq0)[M10a](https://youtu.be/KIEjigOPoq0) | [M10a](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-17mar21.10a-network-topology-analysis.onweb.mp4) |
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| 25m10b | Networks - Network Quantities | [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10b-network-quantities.pptx)| [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10b-network-quantities.pdf) | [](https://youtu.be/tmgECW9Pjoo)[M10b](https://youtu.be/tmgECW9Pjoo) | [M10b](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-17mar21.10b-network-topology-analysis.onweb.mp4) |
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| 25m10c | Networks - Network Generation Models | [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10c-network-generation.pptx)| [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10c-network-generation.pdf) | [](https://youtu.be/FalSiWgVF3A)[M10c](https://youtu.be/FalSiWgVF3A) | [M10c](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-29mar21.10c-network-topology-analysis.onweb.mp4) |
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| 25m10d | Networks - Network Toplogy Analysis | | | [](https://youtu.be/zZb_uZY69ac)[M10d](https://youtu.be/zZb_uZY69ac) | [](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-29mar21.10d-network-topology-analysis.onweb.mp4)[M10d](http://files.gersteinlab.org/media/videos/BioDataSciMiningModeling-Lecture_default.cbb752b21-29mar21.10d-network-topology-analysis.onweb.mp4) |
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| 25m10e | Networks - Network Prediction | [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10e-network-prediction.pptx)| [x](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10e-network-prediction.pdf) | | [](http://files2.gersteinlab.org/public-docs/2023/04.13/network/23m10e--cbb752-MG-spr23-network-prediction.mp4)[](http://files2.gersteinlab.org/public-docs/2023/04.13/network/23m10e--cbb752-MG-spr23-network-prediction.mp4) [25m10e](https://files.gersteinlab.org/public-docs/2025/03.17/cbb752-25m10e-network-prediction.mp4)|
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| 25i3 | Transition - Mining to Modeling | | | | [23i3](http://files2.gersteinlab.org/public-docs/2023/04.13/network/23i3--cbb752-MG-spr23-trans-mine2model.mp4) |

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