docker-compose-for-data-upload.yml

version: '3'

services:

  i2b2-web:
    image: i2b2/i2b2-web:p1
    ports:
      - "80:80"
      - "443:443"
    command: /run-httpd.sh localhost
    networks:
      - i2b2net
    depends_on:
      - i2b2-wildfly


  i2b2-wildfly:
    image: i2b2/i2b2-wildfly:release-v1.7.10.0001
    ports:
      - "8080:8080"
      - "9990:9990"
    networks:
      - i2b2net
    depends_on:
      - i2b2-pg


  i2b2-pg:
    image: i2b2/i2b2-pg:p1
    ports:
      - "5432:5432"
    networks:
      - i2b2net

  i2b2-python-delete-data:
    image: i2b2/i2b2-python-delete-data:0.1
    stdin_open: true
    tty: true
    command: "python delete_all_data.py "
    environment:
      - I2B2_DB_HOST=localhost 
#    networks:
#      - i2b2net
#    depends_on:
#      - i2b2-pg

  i2b2-cdi-sftp:
    image: atmoz/sftp
    container_name:  i2b2-cdi-sftp
#    volumes:
#       - "./sftpdata/concept:/home/${SFTP_USER:-i2b2sftpuser}/concept"
#       - "./sftpdata/data:/home/${SFTP_USER:-i2b2sftpuser}/data"
    ports:
      - "2222:22"
    networks:
      - i2b2net
    command: ${SFTP_USER:-i2b2sftpuser}:${SFTP_PASS:-i2b2sftppass}:1001::concept,data


  i2b2-cdi-pg:
    image: postgres:9.6.5
    container_name:  i2b2-cdi-pg
#   volumes:
#     - ~/volumes/postgresql/:/var/lib/postgresql/data/
    networks:
      - i2b2net
    environment:
      - POSTGRES_USER=igia
      - POSTGRES_PASSWORD=igiaPwd
      - POSTGRES_DB=clinical_data_infrastructure
#   ports:
#     - "4432:5432"

  i2b2-cdi-app:
        image: i2b2/i2b2-cdi-app:alpha-v1
        container_name: i2b2-cdi-app
        environment:
            - SPRING_PROFILES_ACTIVE=prod
            - APP_DATASOURCE_POSTGRESQL_URL=jdbc:postgresql://i2b2-cdi-pg:5432/clinical_data_infrastructure
            - APP_DATASOURCE_POSTGRESQL_USERNAME=igia
            - APP_DATASOURCE_POSTGRESQL_PASSWORD=igiaPwd
            - APP_DATASOURCE_POSTGRESQL_DRIVER=com.zaxxer.hikari.HikariDataSource

            - APP_DATASOURCE_I2B2_URL=jdbc:postgresql://i2b2db:5432/i2b2
            - APP_DATASOURCE_I2B2_USERNAME=i2b2
            - APP_DATASOURCE_I2B2_PASSWORD=i2b2
            - APP_DATASOURCE_I2B2_DRIVER=com.zaxxer.hikari.HikariDataSource

            - APP_LOGGING_LOGSTASH_ENABLED=false
            - APP_LOGGING_LOGSTASH_METRICSENABLED=false

            - INTEGRATION_SFTP_REMOTEDIRPATHCONCEPT=/concept/
            - INTEGRATION_SFTP_REMOTEDIRPATHDATA=/data/
            - INTEGRATION_SFTP_LOCALDIRPATHCONCEPT=/opt/igia/concept/
            - INTEGRATION_SFTP_LOCALDIRPATHDATA=/opt/igia/data/
            - INTEGRATION_SFTP_HOST=i2b2-cdi-sftp
            - INTEGRATION_SFTP_PORT=22
            - INTEGRATION_SFTP_USER=${SFTP_USER:-i2b2sftpuser}
            - INTEGRATION_SFTP_PASSWORD=${SFTP_PASS:-i2b2sftppass}
        volumes:
            - /opt/igia/concept
            - /opt/igia/data
        depends_on:
            - i2b2-cdi-pg
            - i2b2-cdi-sftp
        networks:
            - i2b2net  

  
  centos-zip:
        image: centos
        build: centos_zip/.
        container_name: centos-zip
        tty: true
        volumes:
            - ${PWD}:/to_zip
        #command: "yum -y install zip && /bin/bash"
        #command: "yum -y install zip && echo 'zipped'"

networks: 
    i2b2net:
       driver: bridge