add linter skip rules for 24.2

[bernt-matthias]

Just checked what would happen with the new linters for 24.2

planemo ci_find_repos --exclude packages --exclude deprecated --exclude_from .tt_skip --output repository_list.txt
mapfile -t REPO_ARRAY < repository_list.txt
for DIR in "${REPO_ARRAY[@]}"; do 
    cat .lint_skip >> $DIR/.lint_skip; 
    planemo shed_lint --tools --ensure_metadata --urls --skip_file "$DIR"/.lint_skip --report_level warn --fail_level warn --recursive "$DIR" | tee -a lint_report.txt; 
    cat lint_report.txt | egrep "(ERROR|WARNING) \(" | sed 's/.. \(ERROR\|WARNING\) (\(.*\)).*/\2/' > new; 
    cat "$DIR"/.lint_skip new | sort -u > tmp; 
    mv tmp "$DIR"/.lint_skip;
    rm new lint_report.txt;
done
find . -name .lint_skip -size 0 -delete

All OutputsFilterExpression failures are probably wrong. I need to fix them. But it's only a few.

Most are TestsCaseValidation.

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