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volcanoplot bump #6622

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volcanoplot bump #6622

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bgruening
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@bgruening bgruening commented Dec 11, 2024 •
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FOR CONTRIBUTOR:

  • I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
  • License permits unrestricted use (educational + commercial)
  • This PR adds a new tool or tool collection
  • This PR updates an existing tool or tool collection
  • This PR does something else (explain below)

fixes #6620

@bgruening bgruening mentioned this pull request Dec 11, 2024
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pcm32 commented Dec 11, 2024

Maybe on this one you want to link the use of the macros? or this tool is not using them? Also, I presume that there might be some default or something missing on the Display categories by: variable which made the workflow invocations fail? So that people can use this in workflows later.

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pcm32 commented Dec 11, 2024

This was the hidden error that this tool was generating (there is actually more than one variable):

bioblend.ConnectionError: Unexpected HTTP status code: 400: {"err_msg": {"shape_col": "No value found for 'Categories that can be used to plot different shapes or facet (useful if multivariable associations are investigated)'.", "shape_or_facet"
: "No value found for 'Display categories by:'."}, "err_code": 0, "err_data": {"39": {"shape_col": "No value found for 'Categories that can be used to plot different shapes or facet (useful if multivariable associations are investigated)'.", "sh
ape_or_facet": "No value found for 'Display categories by:'."}}}

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This tool does not have a macro: https://github.com/bgruening/tools-iuc/tree/volcanoplot_bump/tools/volcanoplot

Or are you saying you want to have something in a macro?

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pcm32 commented Dec 11, 2024

If it doesn't don't worry, I thought it had one.

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