Team hackathon goals 2024

[mvdbeek]

We have a team-wide hackathon on 16+17 of December, hopefully we can hack on a few of these items:

For website:

• Improve header component, welcome page
• Improve Galaxy URL selector for iwc.galaxyproject.org
  • (also fix Dockstore import does not work if Galaxy URL has a trailing slash #618)
• Include planemo run instructions
• Generate and include planemo job template
• Include most recent version in preview component, last update time
• Scrape dockstore categories and group workflows by category

For planemo:

• extend linting
  • license check: https://github.com/galaxyproject/iwc/pull/617/files#r1862374391
  • improve changelog linting: https://github.com/galaxyproject/iwc/pull/617/files#r1862380758
  • workflow linting that flag email post job action: https://github.com/galaxyproject/iwc/pull/617/files#r1862360462
• improve console output for workflow run
  • Print steps completed, steps left, currently running steps
    • (explore https://github.com/Textualize/rich)
• Generate README.md and CHANGELOG.md entries (Enhancements for IWC planemo#1482)
• Replace .dockstore.yml with .iwc.yml and generate artifacts from that file
  • allow marking workflows / tests as needing external server, on demand stuff like omero

For workflows:

• Fix existing linting issues (missing readme, changelog)
• Fix workflow names, workflow parameter label to match pull request guidelines (Human readable)

Galaxy

• [Sample sheets] (Implement Sample Sheets  galaxy#19305)
• Take Pause step out of experimental state

Documentation

• Use of template repo for non-IWC organizations
  • https://github.com/mvdbeek/iwc-consumer/blob/main/.github/workflows/workflow_test.yml

Automation:

• Generate DOIs for every workflow

[mvdbeek]

Once I'm done with galaxyproject/galaxy#19328 I'll do

Replace .dockstore.yml with .iwc.yml and generate artifacts from that file

that would be a place where we can store categories scraped with the script @dannon was going to work on, and that can later serve as the source of truth for categories (could use the dockstore API to set categories).

[ahmedhamidawan]

I'll be working on

Improve header component, welcome page

[dannon]

Linked PR above; as it mentions I'm working on overhauling the primary listing component and adding additional details (categories, update_time, etc)

[wm75]

Regarding categories: would it make sense to add edam topics and edam operations to our WFs, then use these as the categories?

Equivalent to what we're doing in iuc?

[mvdbeek]

If you can reproduce https://dockstore.org/organizations/iwc with edam, yes. But I don't think you can ?

[wm75]

Well, not exactly, but what makes their categories the standard to aim for?

[mvdbeek]

It's that I defined them, very easily. I am happy to make slight alterations if that matches something in edam.