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Merge pull request #30 from galaxyproject/rau
remove AU temporary
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‎1-PreProcessing/README.md

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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-pre-processing) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() |
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| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-pre-pp) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]( https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-read-pre-processing) |
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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-pre-processing) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() |
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# Preprocessing of raw SARS-CoV-2 reads

‎2-Assembly/README.md

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| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-assembly) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-assembly) |
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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-assembly) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() |
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| usegalaxy.org | usegalaxy.eu |
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|:--------:|:------------:|
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| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-assembly) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-assembly) |
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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-assembly) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() |
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# Assembly of SARS-CoV-2 from pre-processed reads

‎3-MRCA/README.md

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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-mrca-date) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-mrca-analysis) |
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| [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) |
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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-mrca-date) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-mrca-analysis) |
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| [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) | [![Jupyter Notebook](https://img.shields.io/static/v1?label=Jupyter%20Notebook&message=run&color=blue)](MRCA_Estimation_Notebook.ipynb) |
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# Dating the most recent common ancestor (MRCA) of SARS-CoV-2

‎4-Variation/README.md

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| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-variation-analysis) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)]() | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-variation-analysis) |
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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-variation) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-intra-variation) |
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# Analysis of variation within individual COVID-19 samples
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## What's the point?

‎5-S-analysis/README.md

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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-s-protein-aa) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-s-gene-conservation) |
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| [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.org/u/aun1/w/covid-19-s-gene-aa) | [![Galaxy workflow](https://img.shields.io/static/v1?label=workflow&message=run&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/w/covid-19-s-gene-conservation) |
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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-s-protein-aa) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-s-gene-conservation) |
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# Analysis of S-protein polymorphism

‎6-RecombinationSelection/README.md

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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-recsel) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)]() | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-recombination-and-selection-analysis) |
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| [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.org/u/aun1/h/covid-19-recsel) | [![Galaxy history](https://img.shields.io/static/v1?label=history&message=view&color=blue)](https://usegalaxy.eu/u/wolfgang-maier/h/covid-19-recombination-and-selection-analysis) |
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# Evolutionary Analysis

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