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pre-release versioning
1 parent d9acd4b commit b277adb

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lines changed

‎schema/vrs/json/Adjacency

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@@ -1,6 +1,6 @@
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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Adjacency",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Adjacency",
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"title": "Adjacency",
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"type": "object",
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"maturity": "draft",
@@ -39,7 +39,7 @@
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
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"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,7 +53,7 @@
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"type": {
@@ -69,10 +69,10 @@
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"items": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
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},
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{
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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]
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},
@@ -84,13 +84,13 @@
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"description": "The sequence found between adjoined sequences.",
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/LengthExpression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LengthExpression"
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},
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/LiteralSequenceExpression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LiteralSequenceExpression"
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},
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/ReferenceLengthExpression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/ReferenceLengthExpression"
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}
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]
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},

‎schema/vrs/json/Allele

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@@ -1,6 +1,6 @@
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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Allele",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Allele",
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"title": "Allele",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
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"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,7 +53,7 @@
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"type": {
@@ -65,10 +65,10 @@
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"location": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
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},
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{
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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],
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"description": "The location of the Allele"
@@ -77,13 +77,13 @@
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"description": "An expression of the sequence state",
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/LengthExpression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LengthExpression"
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},
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/LiteralSequenceExpression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LiteralSequenceExpression"
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},
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/ReferenceLengthExpression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/ReferenceLengthExpression"
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}
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]
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}

‎schema/vrs/json/CisPhasedBlock

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/CisPhasedBlock",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/CisPhasedBlock",
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"title": "CisPhasedBlock",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
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"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -52,7 +52,7 @@
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"type": {
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"items": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/Allele"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Allele"
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},
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{
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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]
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},
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"description": "A list of Alleles that are found in-cis on a shared molecule."
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},
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"sequenceReference": {
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"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceReference",
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceReference",
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"description": "An optional Sequence Reference on which all of the in-cis Alleles are found. When defined, this may be used to implicitly define the `sequenceReference` attribute for each of the CisPhasedBlock member Alleles."
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}
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},

‎schema/vrs/json/CopyNumberChange

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
3-
"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/CopyNumberChange",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/CopyNumberChange",
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"title": "CopyNumberChange",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
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"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"location": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
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},
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{
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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],
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"description": "A location for which the number of systemic copies is described."
@@ -75,7 +75,7 @@
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},
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"copyChange": {
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"description": "MUST be a Coding representing one of \"EFO:0030069\" (complete genomic loss), \"EFO:0020073\" (high-level loss), \"EFO:0030068\" (low-level loss), \"EFO:0030067\" (loss), \"EFO:0030064\" (regional base ploidy), \"EFO:0030070\" (gain), \"EFO:0030071\" (low-level gain), \"EFO:0030072\" (high-level gain).",
78-
"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Coding"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Coding"
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}
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},
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"required": [

‎schema/vrs/json/CopyNumberCount

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/CopyNumberCount",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/CopyNumberCount",
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"title": "CopyNumberCount",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
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"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"location": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation"
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},
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{
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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],
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"description": "A location for which the number of systemic copies is described."
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"copies": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/Range"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Range"
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},
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{
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"type": "integer"

‎schema/vrs/json/DerivativeMolecule

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/DerivativeMolecule",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/DerivativeMolecule",
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"title": "DerivativeMolecule",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
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"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/vrs/2.x/json/Expression"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression"
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}
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},
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"type": {
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"items": {
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/TraversalBlock"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/TraversalBlock"
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},
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{
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/IRI"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/IRI"
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}
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]
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},

‎schema/vrs/json/Expression

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Expression",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Expression",
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"title": "Expression",
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"type": "object",
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"maturity": "draft",

‎schema/vrs/json/LengthExpression

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/LengthExpression",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LengthExpression",
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"title": "LengthExpression",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
4343
"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -53,7 +53,7 @@
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"description": "The length of the sequence.",
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"oneOf": [
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{
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"$ref": "/ga4gh/schema/vrs/2.x/json/Range"
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Range"
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},
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{
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"type": "integer"

‎schema/vrs/json/LiteralSequenceExpression

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/LiteralSequenceExpression",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/LiteralSequenceExpression",
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"title": "LiteralSequenceExpression",
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"type": "object",
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"maturity": "draft",
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"type": "array",
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"ordered": false,
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"items": {
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"$ref": "/ga4gh/schema/gks-common/1.x/data-types/json/Extension"
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"$ref": "/ga4gh/schema/gks-common/1.0.0-connect.2024-09.1/data-types/json/Extension"
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},
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"description": "A list of extensions to the Entity, that allow for capture of information not directly supported by elements defined in the model.",
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"$comment": "Extension objects have a key-value data structure that allows definition of custom fields in the data itself. Extensions are not expected to be natively understood, but may be used for pre-negotiated exchange of message attributes between systems."
@@ -50,7 +50,7 @@
5050
"default": "LiteralSequenceExpression"
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},
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"sequence": {
53-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceString",
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"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceString",
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"description": "the literal sequence"
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}
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},

‎schema/vrs/json/Location

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{
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"$schema": "https://json-schema.org/draft/2020-12/schema",
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"$id": "https://w3id.org/ga4gh/schema/vrs/2.x/json/Location",
3+
"$id": "https://w3id.org/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/Location",
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"title": "Location",
55
"type": "object",
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"description": "A contiguous segment of a biological sequence.",
7-
"$ref": "/ga4gh/schema/vrs/2.x/json/SequenceLocation",
7+
"$ref": "/ga4gh/schema/vrs/2.0.0-connect.2024-09.1/json/SequenceLocation",
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"discriminator": {
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"propertyName": "type"
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}

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