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docs/README.md

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| [Refget sequence collections](seqcol.md) | For collections of sequences | :white_check_mark: v1.0 Approved in 2025 |
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| Refget pangenomes | For collections of sequence collections | :fontawesome-solid-gears: Currently in process |
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## What is the main purpose of the refget project?
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Refget standards help to **identify**, **retrieve**, and **compare** reference sequences, like a reference genome. Key principles include:
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## How do the standards work together?
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This image shows how the Refget Sequences standard is used by the Sequence Collections standard. First, sequences are digested to yield a deterministic identifier. These sequence identifiers are then used, together with their names, to create an identifier for a collection.
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<figure>
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<img src="img/refget-umbrella.svg" width="500">
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</figure>
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The Refget Sequences standard is used by the Sequence Collections standard, and the Sequence Collections standard forms the basis of the Pangenomes standard.
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First, sequences are digested to yield a deterministic identifier.
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These sequence identifiers are then used, together with their names, to create an identifier for a collection.
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<figure>
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<img src="img/seqcol_abstract_simple.svg" alt="Refget abstract" class="img-responsive">

docs/img/pyrefget_logo.svg

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