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fgcz/rawrr
Error accessing RAWFileReader library! - The input string ... was not in a correct format.

When I try to read a scan using readSpectrum, I am getting the error Error accessing RAWFileReader library! - The input string ... was not in a correct format. I looked at the tfo temporary .R file generated ...
  • rlumpkin
  • 7
  • Opened 
    3 days ago
  • #84

fgcz/rawrr
XIC mode of readchromatogram is not providing the correct values with sample file

The retention times (and the mass) look incorrect. The plot is also not o.k. The TIC and BPC modes look fine to me. I did: readChromatogram(rawfile = sampleFilePath(), mass = 487.25, type= xic ) and I ...
  • marcoherde
  • 1
  • Opened 
    on Mar 3
  • #83

fgcz/rawrr
Installation of DLLs deletes exe

When installing the DLLs after the exe, the executable gets deleted. This can be confusing. https://github.com/fgcz/rawrr/blob/1667b6d3eb3e6d054ee68521352b30839cb4d7d6/R/dotNetAssembly.R#L193-L199
  • leoschwarz
  • 1
  • Opened 
    on Oct 21, 2024
  • #77

fgcz/rawrr
Newbie: can't even get the first command to run properly

Sorry to be completely inept with this... I ve installed Rawrr according to the instructions: BiocManager::install( rawrr ) $ sudo apt-get install mono-runtime libmono-system-data4.0-cil -y rawrr::installRawFileReaderDLLs() ...
  • buzuddha
  • 15
  • Opened 
    on Oct 17, 2024
  • #76

fgcz/rawrr
end of mono

It looks like the mono project is coming to its end and will be replaced by .NET core The [Mono Project (mono/mono)](https://github.com/mono/mono) (‘original mono’) has been an important part of the .NET ...
good first issue
  • tobiasko
  • 10
  • Opened 
    on Oct 3, 2024
  • #75

fgcz/rawrr
installation instruction outdated

I just installed rawrr on a new system and came across: In general, ThermoFisher.CommonCore dlls can be obtained through: https://planetorbitrap.com/rawfilereader by contacting Jim Shofstahl using ...
  • tobiasko
  • Opened 
    on Oct 3, 2024
  • #74

fgcz/rawrr
readChromatogram not working in xic mode (Windows 11)

Hi, for some reason, I can t get readChromatogram to return XICs. I ve found a similar issue here, but the cause of the error there doesn t apply to me. Here is what I get: library(rawrr) rawfile ...
  • Heriette
  • 1
  • Opened 
    on Aug 30, 2024
  • #73

fgcz/rawrr
auc.rawrrChromatogram question

Hello There, I want to use auc.rawrrChromatogram to calculate area under the curve. However, not all of my peaks are clean and some may have coelution issues. Any suggestions on how to resolve this? I ...
  • flolai
  • 2
  • Opened 
    on Apr 4, 2024
  • #72

fgcz/rawrr
rawrr::buildRawrrExe() fails

I have created a Docker container based on rocker/r2u for my statistical analyses. Unfortunately, rawrr is not included in the pool of r2u packages and therefore has to be installed manually. I have attempted ...
  • SamThilmany
  • 6
  • Opened 
    on Feb 16, 2024
  • #71

fgcz/rawrr
speed up readIndex/readSpectrum by base::textConnection

A potential constraint lies in the data input/output speed of the disk. one solution is to redirect the output of a command executed with system2 to a base::textConnection. I hope the following code ...
enhancement
  • asepsiswu
  • 14
  • Opened 
    on Nov 8, 2023
  • #70
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