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IO Exeception attempting to load global transforms.. #123

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philippechevieux opened this issue Oct 3, 2019 · 4 comments
Open

IO Exeception attempting to load global transforms.. #123

philippechevieux opened this issue Oct 3, 2019 · 4 comments

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@philippechevieux
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Hi,

I reinstalled exakat by following your documentation.

Before reviewing my code i was trying to test if everything was ok with the following commands :

php exakat.phar init -p sculpin -R https://github.com/sculpin/sculpin
php exakat.phar project -p sculpin

But it displays this error :

Error : The script submitted for processing evaluated in the ScriptEngine with errors and could not be processed. Check the script submitted for syntax errors or other problems and then resubmit. : startup failed:
IO Exception attempting to load global transforms:/Users/me/Documents/QA_Analysequalite/php/bin/exakat/tinkergraph/lib/groovy-2.5.6-indy.jar (No such file or directory)

1 error


 ===================  SERVER TRACE  =========================
array (
  'stackTrace' => 'org.codehaus.groovy.control.MultipleCompilationErrorsException: startup failed:
IO Exception attempting to load global transforms:/Users/me/Documents/QA_Analysequalite/php/bin/exakat/tinkergraph/lib/groovy-2.5.6-indy.jar (No such file or directory)

1 error

	at org.codehaus.groovy.control.ErrorCollector.failIfErrors(ErrorCollector.java:311)
	at org.codehaus.groovy.control.ProcessingUnit.completePhase(ProcessingUnit.java:151)
	at org.codehaus.groovy.control.ProcessingUnit.gotoPhase(ProcessingUnit.java:170)
	at org.codehaus.groovy.control.CompilationUnit.compile(CompilationUnit.java:590)
	at groovy.lang.GroovyClassLoader.doParseClass(GroovyClassLoader.java:390)
	at groovy.lang.GroovyClassLoader.access$300(GroovyClassLoader.java:89)
	at groovy.lang.GroovyClassLoader$5.provide(GroovyClassLoader.java:330)
	at groovy.lang.GroovyClassLoader$5.provide(GroovyClassLoader.java:327)
	at org.codehaus.groovy.runtime.memoize.ConcurrentCommonCache.getAndPut(ConcurrentCommonCache.java:147)
	at groovy.lang.GroovyClassLoader.parseClass(GroovyClassLoader.java:325)
	at groovy.lang.GroovyClassLoader.parseClass(GroovyClassLoader.java:309)
	at groovy.lang.GroovyClassLoader.parseClass(GroovyClassLoader.java:251)
	at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine$GroovyCacheLoader.lambda$load$0(GremlinGroovyScriptEngine.java:819)
	at java.util.concurrent.CompletableFuture$AsyncSupply.run(CompletableFuture.java:1590)
	at java.util.concurrent.CompletableFuture.asyncSupplyStage(CompletableFuture.java:1604)
	at java.util.concurrent.CompletableFuture.supplyAsync(CompletableFuture.java:1830)
	at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine$GroovyCacheLoader.load(GremlinGroovyScriptEngine.java:817)
	at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine$GroovyCacheLoader.load(GremlinGroovyScriptEngine.java:812)
	at com.github.benmanes.caffeine.cache.BoundedLocalCache$BoundedLocalLoadingCache.lambda$new$0(BoundedLocalCache.java:3117)
	at com.github.benmanes.caffeine.cache.LocalCache.lambda$statsAware$0(LocalCache.java:144)
	at com.github.benmanes.caffeine.cache.BoundedLocalCache.lambda$doComputeIfAbsent$16(BoundedLocalCache.java:1968)
	at java.util.concurrent.ConcurrentHashMap.compute(ConcurrentHashMap.java:1853)
	at com.github.benmanes.caffeine.cache.BoundedLocalCache.doComputeIfAbsent(BoundedLocalCache.java:1966)
	at com.github.benmanes.caffeine.cache.BoundedLocalCache.computeIfAbsent(BoundedLocalCache.java:1949)
	at com.github.benmanes.caffeine.cache.LocalCache.computeIfAbsent(LocalCache.java:113)
	at com.github.benmanes.caffeine.cache.LocalLoadingCache.get(LocalLoadingCache.java:67)
	at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine.getScriptClass(GremlinGroovyScriptEngine.java:567)
	at org.apache.tinkerpop.gremlin.groovy.jsr223.GremlinGroovyScriptEngine.eval(GremlinGroovyScriptEngine.java:374)
	at javax.script.AbstractScriptEngine.eval(AbstractScriptEngine.java:233)
	at org.apache.tinkerpop.gremlin.groovy.engine.GremlinExecutor.lambda$eval$0(GremlinExecutor.java:266)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
	at java.util.concurrent.FutureTask.run(FutureTask.java:266)
	at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
	at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
	at java.lang.Thread.run(Thread.java:748)
',
  'exceptions' =>
  array (
    0 => 'org.codehaus.groovy.control.MultipleCompilationErrorsException',
  ),
)
 ============================================================

on file phar:///Users/me/Documents/QA_Analysequalite/php/bin/exakat/exakat.phar/vendor/brightzone/gremlin-php/src/Connection.php
on line 847

It seem that groovy-2.5.6-indy.jar is not found. So i checked in tinkergraph folder and indeed there is not such file. But there is a groovy-2.5.7-indy.jar available :

Capture d’écran 2019-10-03 à 15 46 30

Here is the result of exakat doctor (seem correct) :

exakat : 
    executable           : exakat.phar
    version              : 1.9.7
    build                : 999
    exakat.ini           : ./config/exakat.ini,
                           config/rulesets.ini
    graphdb              : gsneo4j
    reports              : 
    rulesets             : CompatibilityPHP53,
                           CompatibilityPHP54,
                           CompatibilityPHP55,
                           CompatibilityPHP56,
                           CompatibilityPHP70,
                           CompatibilityPHP71,
                           CompatibilityPHP72,
                           CompatibilityPHP73,
                           CompatibilityPHP74,
                           Dead code,
                           Security,
                           Analyze,
                           Top10,
                           Preferences,
                           Appinfo,
                           Appcontent,
                           Suggestions
    extra rulesets       : cacomRuleset
    tokenslimit          : 1 000 000 000

PHP : 
    binary               : 7.1.14
    memory_limit         : 8192M
    short_open_tags      : Off
    ext/curl             : Yes
    ext/hash             : Yes
    ext/phar             : Yes
    ext/sqlite3          : Yes
    ext/tokenizer        : Yes
    ext/mbstring         : Yes
    ext/json             : Yes
    ext/xmlwriter        : Yes
    ext/pcntl            : No (Optional)
    pcre.jit             : Off (Must be off on PHP 7.3 and OSX)

java : 
    installed            : Yes
    type                 : Java(TM) SE Runtime Environment (build 1.8.0_201-b09)
    version              : java
    $JAVA_HOME           : 
    $JAVA_OPTIONS        : 

tinkergraph : 
    installed            : No (folder : tinkergraph)

gsneo4j : 
    installed            : Yes (folder : /Users/me/Documents/AnalyseQualite/php/bin/exakat/tinkergraph)
    host                 : 127.0.0.1
    port                 : 8182
    gremlin version      : 3.4.3
    neo4j version        : 3.2.3

folders : 
    projects folder      : Yes
    projects/test        : No
    projects/default     : No
    projects/onepage     : No

php52 : 
    configured           : No

php53 : 
    configured           : No

php54 : 
    configured           : No

php55 : 
    configured           : No

php56 : 
    configured           : No

php70 : 
    configured           : No

php71 : 
    configured           : Yes (/usr/bin/php)
    actual version       : 7.1.14

php72 : 
    configured           : No

php73 : 
    configured           : No

php74 : 
    configured           : No

php80 : 
    configured           : No

Thanks !
@philippechevieux
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philippechevieux commented Oct 4, 2019 •
edited
Loading

If it helps, I have a complete log of the execution (approximatly 24000 lines because it print a
Brightzone\GremlinDriver\ServerException Object)

@philippechevieux
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Author

I will try to run Exakat 1.9.9 maybe it will be fixed now

@philippechevieux
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philippechevieux commented Oct 25, 2019 •
edited
Loading

Well this is new :

1030/1031 [==================================================================>] 99.90% 00:00:00   
Init finalize
loaded 144066 definitions
loaded nodes (duration : 7,563.17 ms)
Cleaning CSV
1031/1031 [==================================================================>] 100.00% 00:00:00  
Start load final
add Returned void
7685 added returned to Void
fixing Definitions for traits and interfaces
0 removed interface extends link
0 removed class extends link
0 removed class implements link
0 removed class implements link
fixing Fullnspath for Functions
0 fixed Fullnspath for Functions
Set 86 functioncall fallingback
Set 0 extension functioncall fallingback
spotFallbackConstants
Link constant definitions : skipping.
Fixed Fullnspath for Constants
934 SpotPHPNativeConstants
Created 88 isModified values
Created 1488 isModified values with array append
Created 467 isModified values with unset
Created 467 isModified values with =>
Set 10396 functions, constants and class with ignored_dir
End load final
Project loaded
Running the following rulesets : First
1/9 [========>----------------------------------------------------------------] 11.11% 00:00:00   
2/9 [================>--------------------------------------------------------] 22.22% 00:00:31   
3/9 [========================>------------------------------------------------] 33.33% 00:00:33   
4/9 [================================>----------------------------------------] 44.44% 00:00:33   
5/9 [========================================>--------------------------------] 55.56% 00:00:21   
6/9 [================================================>------------------------] 66.67% 00:00:22   
7/9 [========================================================>----------------] 77.78% 00:00:14   
8/9 [================================================================>--------] 88.89% 00:00:06   
9/9 [========================================================================>] 100.00% 00:00:00  
Error while running the ruleset First.
Trying next ruleset.
Initial dump
Removing old .dump.sqlite
Inited tables
Collecting data


Error : The script submitted for processing evaluated in the ScriptEngine with errors and could not be processed. Check the script submitted for syntax errors or other problems and then resubmit. : The property does not exist as the key has no associated value for the provided element: v[21075]:rank

 ===================  SERVER TRACE  =========================
array (
  'stackTrace' => 'java.lang.IllegalStateException: The property does not exist as the key has no associated value for the provided element: v[21075]:rank
        at org.apache.tinkerpop.gremlin.structure.Property$Exceptions.propertyDoesNotExist(Property.java:155)
        at org.apache.tinkerpop.gremlin.structure.Element.lambda$value$1(Element.java:94)
        at org.apache.tinkerpop.gremlin.structure.Property.orElseThrow(Property.java:101)
        at org.apache.tinkerpop.gremlin.structure.Element.value(Element.java:94)
        at org.apache.tinkerpop.gremlin.structure.Element$value.call(Unknown Source)
        at Script80$_run_closure4$_closure13.doCall(Script80.groovy:1)
        at sun.reflect.GeneratedMethodAccessor87.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:405)
        at groovy.lang.Closure.call(Closure.java:421)
        at groovy.util.OrderBy.compare(OrderBy.java:73)
        at java.util.TimSort.countRunAndMakeAscending(TimSort.java:355)
        at java.util.TimSort.sort(TimSort.java:220)
        at java.util.Arrays.sort(Arrays.java:1512)
        at java.util.ArrayList.sort(ArrayList.java:1462)
        at java.util.Collections.sort(Collections.java:175)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.sort(DefaultGroovyMethods.java:9363)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.sort(DefaultGroovyMethods.java:9327)
        at org.codehaus.groovy.runtime.DefaultGroovyMethods.sort(DefaultGroovyMethods.java:9227)
        at org.codehaus.groovy.runtime.dgm$629.invoke(Unknown Source)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite$PojoMetaMethodSiteNoUnwrapNoCoerce.invoke(PojoMetaMethodSite.java:244)
        at org.codehaus.groovy.runtime.callsite.PojoMetaMethodSite.call(PojoMetaMethodSite.java:53)
        at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:127)
        at Script80$_run_closure4.doCall(Script80.groovy:1)
        at sun.reflect.GeneratedMethodAccessor91.invoke(Unknown Source)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
        at java.lang.reflect.Method.invoke(Method.java:498)
        at org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:101)
        at groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:323)
        at org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:263)
        at groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1041)
        at groovy.lang.Closure.call(Closure.java:405)
        at org.codehaus.groovy.runtime.ConvertedClosure.invokeCustom(ConvertedClosure.java:50)
        at org.codehaus.groovy.runtime.ConversionHandler.invoke(ConversionHandler.java:122)
        at com.sun.proxy.$Proxy55.accept(Unknown Source)
        at org.apache.tinkerpop.gremlin.process.traversal.step.sideEffect.LambdaSideEffectStep.sideEffect(LambdaSideEffectStep.java:46)
        at org.apache.tinkerpop.gremlin.process.traversal.step.sideEffect.SideEffectStep.processNextStart(SideEffectStep.java:39)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.map.FlatMapStep.processNextStart(FlatMapStep.java:48)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.filter.FilterStep.processNextStart(FilterStep.java:37)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.filter.FilterStep.processNextStart(FilterStep.java:37)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.sideEffect.SideEffectStep.processNextStart(SideEffectStep.java:38)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.branch.RepeatStep.standardAlgorithm(RepeatStep.java:199)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ComputerAwareStep.processNextStart(ComputerAwareStep.java:46)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.filter.FilterStep.processNextStart(FilterStep.java:37)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.filter.FilterStep.processNextStart(FilterStep.java:37)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.sideEffect.SideEffectStep.processNextStart(SideEffectStep.java:38)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.map.FlatMapStep.processNextStart(FlatMapStep.java:48)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.filter.FilterStep.processNextStart(FilterStep.java:37)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.map.FlatMapStep.processNextStart(FlatMapStep.java:48)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.sideEffect.SideEffectStep.processNextStart(SideEffectStep.java:38)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.filter.FilterStep.processNextStart(FilterStep.java:37)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.map.MapStep.processNextStart(MapStep.java:36)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.ExpandableStepIterator.next(ExpandableStepIterator.java:50)
        at org.apache.tinkerpop.gremlin.process.traversal.step.map.MapStep.processNextStart(MapStep.java:36)
        at org.apache.tinkerpop.gremlin.process.traversal.step.util.AbstractStep.hasNext(AbstractStep.java:143)
        at org.apache.tinkerpop.gremlin.process.traversal.util.DefaultTraversal.hasNext(DefaultTraversal.java:197)
        at org.apache.tinkerpop.gremlin.server.op.AbstractOpProcessor.handleIterator(AbstractOpProcessor.java:93)
        at org.apache.tinkerpop.gremlin.server.op.AbstractEvalOpProcessor.lambda$evalOpInternal$5(AbstractEvalOpProcessor.java:263)
        at org.apache.tinkerpop.gremlin.groovy.engine.GremlinExecutor.lambda$eval$0(GremlinExecutor.java:277)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
        at java.util.concurrent.FutureTask.run(FutureTask.java:266)
        at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1149)
        at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:624)
        at java.lang.Thread.run(Thread.java:748)
',
  'exceptions' =>
  array (
    0 => 'java.lang.IllegalStateException',
  ),
)

@philippechevieux
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Temporary solution was to downgrad Exakat to 1.5.9

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@philippechevieux