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Fix indentation of unrooted and circular text functions
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2 files changed

+56
-56
lines changed

2 files changed

+56
-56
lines changed

baltic/baltic.py

Lines changed: 54 additions & 54 deletions
Original file line numberDiff line numberDiff line change
@@ -792,64 +792,64 @@ def addText(self,ax,target=None,x_attr=None,y_attr=None,text=None,zorder=None,**
792792
ax.text(x,y,text(k),zorder=z,**kwargs)
793793
return ax
794794

795-
def addTextUnrooted(self,ax,target=None,rotation=None,x_attr=None,y_attr=None,text=None,zorder=None,**kwargs):
796-
if target==None: target=lambda k: k.is_leaf()
797-
if rotation==None: rotation=lambda k: 0.0
798-
if x_attr==None: x_attr=lambda k: k.x
799-
if y_attr==None: y_attr=lambda k: k.y
800-
if text==None: text=lambda k: k.name
801-
if zorder==None: zorder=4
802-
803-
for k in filter(target,self.Objects):
804-
local_kwargs=dict(kwargs)
805-
806-
x,y=x_attr(k),y_attr(k)
807-
z=zorder
808-
809-
assert 'tau' in k.traits, 'Branch does not have angle tau computed by drawUnrooted().'
810-
rot=np.rad2deg(k.traits['tau'])%360
811-
812-
if 'horizontalalignment' not in local_kwargs: local_kwargs['horizontalalignment']='right' if 90<rot<270 else 'left'
813-
if 'verticalalignment' not in local_kwargs: local_kwargs['verticalalignment']='center'
814-
815-
rot=rot+180 if 90<rot<270 else rot
816-
817-
ax.text(x,y,text(k),rotation=rot,rotation_mode='anchor',zorder=z,**local_kwargs)
818-
819-
return ax
820-
821-
def addTextCircular(self,ax,target=None,text=None,x_attr=None,y_attr=None,circStart=0.0,circFrac=1.0,inwardSpace=0.0,normaliseHeight=None,zorder=None,**kwargs):
822-
if target==None: target=lambda k: k.is_leaf()
823-
if x_attr==None: x_attr=lambda k:k.x
824-
if y_attr==None: y_attr=lambda k:k.y
825-
if text==None: text=lambda k: k.name
826-
if zorder==None: zorder=4
827-
828-
circ_s=circStart*math.pi*2
829-
circ=circFrac*math.pi*2
830-
831-
allXs=list(map(x_attr,self.Objects))
832-
if normaliseHeight==None: normaliseHeight=lambda value: (value-min(allXs))/(max(allXs)-min(allXs))
833-
834-
for k in filter(target,self.Objects): ## iterate over branches
835-
local_kwargs=dict(kwargs) ## copy global kwargs into a local version
836-
837-
x=normaliseHeight(x_attr(k)+inwardSpace) ## get branch x position
838-
y=y_attr(k) ## get y position
795+
def addTextUnrooted(self,ax,target=None,rotation=None,x_attr=None,y_attr=None,text=None,zorder=None,**kwargs):
796+
if target==None: target=lambda k: k.is_leaf()
797+
if rotation==None: rotation=lambda k: 0.0
798+
if x_attr==None: x_attr=lambda k: k.x
799+
if y_attr==None: y_attr=lambda k: k.y
800+
if text==None: text=lambda k: k.name
801+
if zorder==None: zorder=4
839802

840-
y=circ_s+circ*y/self.ySpan
841-
X=math.sin(y)
842-
Y=math.cos(y)
803+
for k in filter(target,self.Objects):
804+
local_kwargs=dict(kwargs)
805+
806+
x,y=x_attr(k),y_attr(k)
807+
z=zorder
808+
809+
assert 'tau' in k.traits, 'Branch does not have angle tau computed by drawUnrooted().'
810+
rot=np.rad2deg(k.traits['tau'])%360
811+
812+
if 'horizontalalignment' not in local_kwargs: local_kwargs['horizontalalignment']='right' if 90<rot<270 else 'left'
813+
if 'verticalalignment' not in local_kwargs: local_kwargs['verticalalignment']='center'
814+
815+
rot=rot+180 if 90<rot<270 else rot
816+
817+
ax.text(x,y,text(k),rotation=rot,rotation_mode='anchor',zorder=z,**local_kwargs)
818+
819+
return ax
820+
821+
def addTextCircular(self,ax,target=None,text=None,x_attr=None,y_attr=None,circStart=0.0,circFrac=1.0,inwardSpace=0.0,normaliseHeight=None,zorder=None,**kwargs):
822+
if target==None: target=lambda k: k.is_leaf()
823+
if x_attr==None: x_attr=lambda k:k.x
824+
if y_attr==None: y_attr=lambda k:k.y
825+
if text==None: text=lambda k: k.name
826+
if zorder==None: zorder=4
843827

844-
rot=np.rad2deg(y)%360
828+
circ_s=circStart*math.pi*2
829+
circ=circFrac*math.pi*2
845830

846-
if 'horizontalalignment' not in local_kwargs: local_kwargs['horizontalalignment']='right' if 180<rot<360 else 'left' ## rotate labels to aid readability
847-
if 'verticalalignment' not in local_kwargs: local_kwargs['verticalalignment']='center'
848-
rot=360-rot-90 if 180<rot<360 else 360-rot+90
831+
allXs=list(map(x_attr,self.Objects))
832+
if normaliseHeight==None: normaliseHeight=lambda value: (value-min(allXs))/(max(allXs)-min(allXs))
833+
834+
for k in filter(target,self.Objects): ## iterate over branches
835+
local_kwargs=dict(kwargs) ## copy global kwargs into a local version
836+
837+
x=normaliseHeight(x_attr(k)+inwardSpace) ## get branch x position
838+
y=y_attr(k) ## get y position
839+
840+
y=circ_s+circ*y/self.ySpan
841+
X=math.sin(y)
842+
Y=math.cos(y)
843+
844+
rot=np.rad2deg(y)%360
845+
846+
if 'horizontalalignment' not in local_kwargs: local_kwargs['horizontalalignment']='right' if 180<rot<360 else 'left' ## rotate labels to aid readability
847+
if 'verticalalignment' not in local_kwargs: local_kwargs['verticalalignment']='center'
848+
rot=360-rot-90 if 180<rot<360 else 360-rot+90
849+
850+
ax.text(X*x,Y*x,text(k),rotation=rot,rotation_mode='anchor',zorder=zorder,**local_kwargs)
849851

850-
ax.text(X*x,Y*x,text(k),rotation=rot,rotation_mode='anchor',zorder=zorder,**local_kwargs)
851-
852-
return ax
852+
return ax
853853

854854
def plotPoints(self,ax,x_attr=None,y_attr=None,target=None,size=None,colour=None,
855855
zorder=None,outline=None,outline_size=None,outline_colour=None,**kwargs):

setup.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -8,10 +8,10 @@
88

99
setup(
1010
name="baltic",
11-
version="0.2.0",
11+
version="0.2.1",
1212
packages=find_packages(),
1313
url="https://github.com/evogytis/baltic",
14-
download_url="https://github.com/evogytis/baltic/archive/v0.2.0.tar.gz",
14+
download_url="https://github.com/evogytis/baltic/archive/v0.2.1.tar.gz",
1515
keywords = ['phylogeny', 'visualization'],
1616
license="gpl-3.0",
1717
author="Gytis Dudas",

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