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environment.yml
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environment.yml
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name: virreport
channels:
- bioconda
- conda-forge
dependencies:
## conda-forge packages
- conda-forge::biopython=1.79
- conda-forge::matplotlib=2.2.3
- conda-forge::numpy=1.16.5
- conda-forge::openjdk=11.0.9.1
- conda-forge::pandas=1.1.5
- conda-forge::libwebp=0.5.2
- conda-forge::pigz=2.6
## bioconda packages
- bioconda::bcftools=1.12
- bioconda::bedtools=2.30.0
- bioconda::blast=2.11.0
- bioconda::bowtie=1.3.0
- bioconda::cap3=10.2011
- bioconda::cutadapt=3.5
- bioconda::emboss=6.6.0
- bioconda::fastp=0.20.1
- bioconda::fastqc=0.11.9
- bioconda::picard=2.25.6
- bioconda::samtools=1.12
- bioconda::spades=3.15.0
- bioconda::umi_tools=1.1.2
- bioconda::velvet=1.2.10
- bioconda::perl-bioperl=1.7.2