CITATION.cff

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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "readepi" in publications use:'
type: software
license: MIT
title: 'readepi: Read Data from Health Information Systems'
version: 0.1.0
abstract: Data import from several health information systems ('HIS'). The current
  version of the package covers 'HIS' such as 'MS SQL', 'MySQL', and 'PostGRESQL'
  servers, 'REDCap', 'DHIS2' and 'Fingertips'.
authors:
- family-names: Mané
  given-names: Karim
  email: karim.mane@lshtm.ac.uk
  orcid: https://orcid.org/0000-0002-9892-2999
preferred-citation:
  type: manual
  title: Read Data From Health Information Systems
  authors:
  - family-names: Mané
    given-names: Karim
    email: karim.mane@lshtm.ac.uk
    orcid: https://orcid.org/0000-0002-9892-2999
  - family-names: Mohammed
    given-names: Nuredin
  - family-names: Bah
    given-names: Bubacarr
  - family-names: Ahadzie
    given-names: Bankolé
  - family-names: Degoot
    given-names: Abdoelnaser
  year: '2023'
  url: https://github.com/epiverse-trace/readepi
repository-code: https://github.com/epiverse-trace/readepi
url: https://epiverse-trace.github.io/readepi/
contact:
- family-names: Mané
  given-names: Karim
  email: karim.mane@lshtm.ac.uk
  orcid: https://orcid.org/0000-0002-9892-2999
keywords:
- data-import
- epidemiology
- epiverse
- health-information-systems
- r
- r-package
references:
- type: software
  title: checkmate
  abstract: 'checkmate: Fast and Versatile Argument Checks'
  notes: Imports
  url: https://mllg.github.io/checkmate/
  repository: https://CRAN.R-project.org/package=checkmate
  authors:
  - family-names: Lang
    given-names: Michel
    email: michellang@gmail.com
    orcid: https://orcid.org/0000-0001-9754-0393
  year: '2024'
- type: software
  title: DBI
  abstract: 'DBI: R Database Interface'
  notes: Imports
  url: https://dbi.r-dbi.org
  repository: https://CRAN.R-project.org/package=DBI
  authors:
  - name: R Special Interest Group on Databases (R-SIG-DB)
  - family-names: Wickham
    given-names: Hadley
  - family-names: Müller
    given-names: Kirill
    email: kirill@cynkra.com
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2024'
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
    orcid: https://orcid.org/0000-0003-4777-038X
  year: '2024'
- type: software
  title: fingertipsR
  abstract: 'fingertipsR: Fingertips Data for Public Health'
  notes: Imports
  url: https://fingertips.phe.org.uk
  authors:
  - family-names: Westermann
    given-names: Annabel
    email: annabel.westermann@dhsc.gov.uk
  - family-names: Fox
    given-names: Sebastian
    email: sebsfox@gmail.com
  - family-names: Nanayakkara
    given-names: Hadley
    email: hadley.nanayakkara@dhsc.gov.uk
  - family-names: Flowers
    given-names: Julian
  year: '2024'
  version: '>= 1.0.10.9001'
- type: software
  title: glue
  abstract: 'glue: Interpreted String Literals'
  notes: Imports
  url: https://glue.tidyverse.org/
  repository: https://CRAN.R-project.org/package=glue
  authors:
  - family-names: Hester
    given-names: Jim
    orcid: https://orcid.org/0000-0002-2739-7082
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2024'
- type: software
  title: httr2
  abstract: 'httr2: Perform HTTP Requests and Process the Responses'
  notes: Imports
  url: https://httr2.r-lib.org
  repository: https://CRAN.R-project.org/package=httr2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2024'
- type: software
  title: magrittr
  abstract: 'magrittr: A Forward-Pipe Operator for R'
  notes: Imports
  url: https://magrittr.tidyverse.org
  repository: https://CRAN.R-project.org/package=magrittr
  authors:
  - family-names: Bache
    given-names: Stefan Milton
    email: stefan@stefanbache.dk
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  year: '2024'
- type: software
  title: odbc
  abstract: 'odbc: Connect to ODBC Compatible Databases (using the DBI Interface)'
  notes: Imports
  url: https://odbc.r-dbi.org
  repository: https://CRAN.R-project.org/package=odbc
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Gjoneski
    given-names: Oliver
  year: '2024'
- type: software
  title: pool
  abstract: 'pool: Object Pooling'
  notes: Imports
  url: http://rstudio.github.io/pool/
  repository: https://CRAN.R-project.org/package=pool
  authors:
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Borges
    given-names: Barbara
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
- type: software
  title: REDCapR
  abstract: 'REDCapR: Interaction Between R and REDCap'
  notes: Imports
  url: https://ouhscbbmc.github.io/REDCapR/
  repository: https://CRAN.R-project.org/package=REDCapR
  authors:
  - family-names: Beasley
    given-names: Will
    email: wibeasley@hotmail.com
    orcid: https://orcid.org/0000-0002-5613-5006
  year: '2024'
- type: software
  title: RMySQL
  abstract: 'RMySQL: Database Interface and ''MySQL'' Driver for R'
  notes: Imports
  url: https://downloads.mariadb.org/connector-c/
  repository: https://CRAN.R-project.org/package=RMySQL
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroen@berkeley.edu
    orcid: https://orcid.org/0000-0002-4035-0289
  - family-names: James
    given-names: David
  - family-names: DebRoy
    given-names: Saikat
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Horner
    given-names: Jeffrey
  year: '2024'
- type: software
  title: DiagrammeR
  abstract: 'DiagrammeR: Graph/Network Visualization'
  notes: Suggests
  url: https://rich-iannone.github.io/DiagrammeR/
  repository: https://CRAN.R-project.org/package=DiagrammeR
  authors:
  - family-names: Iannone
    given-names: Richard
    email: riannone@me.com
    orcid: https://orcid.org/0000-0003-3925-190X
  - family-names: Roy
    given-names: Olivier
    email: olivierroy71@hotmail.com
  year: '2024'
- type: software
  title: httptest
  abstract: 'httptest: A Test Environment for HTTP Requests'
  notes: Suggests
  url: https://enpiar.com/r/httptest/
  repository: https://CRAN.R-project.org/package=httptest
  authors:
  - family-names: Richardson
    given-names: Neal
    email: neal.p.richardson@gmail.com
    orcid: https://orcid.org/0009-0002-7992-3520
  year: '2024'
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  version: '>= 3.0.0'
identifiers:
- type: url
  value: https://github.com/epiverse-trace/readepi/