nextflow.config

manifest {
    homePage = 'http://github.com/evanfloden/dpa-analysis'
    description = 'Regressive Multiple Sequence Alignment Analysis'
    mainScript = 'main.nf'
}

process {
    container = 'edgano/dpa_v2:e8ea3ba54cf1983d1c61ffd2993c0b376e28fba0'
} 


docker {
    enabled = true
}

//
// Profile Configuration - These setting are location/harware specific and
//                         should not have any effect on the results

profiles {
    crg { includeConfig 'profiles/crg.config' }
}

env {
    CACHE_4_TCOFFEE='${TMPDIR:-/tmp}/.tcoffee/cache'
    LOCKDIR_4_TCOFFEE='${TMPDIR:-/tmp}/.tcoffee/lock'
    TMP_4_TCOFFEE='${TMPDIR:-/tmp}/.tcoffee/tmp'
    DUMMY='$(mkdir -p $CACHE_4_TCOFFEE; mkdir -p $LOCKDIR_4_TCOFFEE; mkdir -p $TMP_4_TCOFFEE)'
}

trace {
    enabled = true
    raw = true
    fields = 'task_id, hash,native_id,name,status,exit,realtime,%cpu,rss,peak_rss,vmem,peak_vmem,rchar,wchar'
}