get tests working or marked as failing

Author: elichad

tests/integration/profiles/workflow-ro-crate-linkml/test_main_workflow.py

@@ -13,6 +13,7 @@
 # limitations under the License.
 
 import logging
+import pytest
 
 from rocrate_validator.models import Severity
 from tests.ro_crates import InvalidMainWorkflow
@@ -21,7 +22,7 @@
 # set up logging
 logger = logging.getLogger(__name__)
 
-
+@pytest.mark.xfail(reason="implementation blocked")
 def test_main_workflow_bad_type():
     """\
     Test a Workflow RO-Crate where the main workflow has an incorrect type.
@@ -52,7 +53,7 @@ def test_main_workflow_no_lang():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_main_workflow_no_image():
     """\
     Test a Workflow RO-Crate where the main workflow does not have an
@@ -69,7 +70,7 @@ def test_main_workflow_no_image():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_main_workflow_no_cwl_desc():
     """\
     Test a Workflow RO-Crate where the main workflow does not have an
@@ -86,7 +87,7 @@ def test_main_workflow_no_cwl_desc():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_main_workflow_cwl_desc_bad_type():
     """\
     Test a Workflow RO-Crate where the main workflow has a CWL description
@@ -101,7 +102,7 @@ def test_main_workflow_cwl_desc_bad_type():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_main_workflow_cwl_desc_no_lang():
     """\
     Test a Workflow RO-Crate where the main workflow has a CWL description
@@ -118,7 +119,7 @@ def test_main_workflow_cwl_desc_no_lang():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_main_workflow_file_existence():
     """\
     Test a Workflow RO-Crate where the main workflow file is not in the crate.
@@ -133,6 +134,7 @@ def test_main_workflow_file_existence():
     )
 
 
+@pytest.mark.xfail(reason="not yet implemented")
 def test_workflow_diagram_file_existence():
     """\
     Test a Workflow RO-Crate where the workflow diagram file is not in the
@@ -147,7 +149,7 @@ def test_workflow_diagram_file_existence():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_workflow_description_file_existence():
     """\
     Test a Workflow RO-Crate where the workflow CWL description file is not in
@@ -162,7 +164,7 @@ def test_workflow_description_file_existence():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_main_workflow_bad_conformsto():
     """\
     Test a Workflow RO-Crate where the main workflow does not conform to the

tests/integration/profiles/workflow-ro-crate-linkml/test_wroc_crate.py

@@ -13,14 +13,16 @@
 # limitations under the License.
 
 import logging
+import pytest
+
 
 from rocrate_validator.models import Severity
 from tests.ro_crates import WROCNoLicense
 from tests.shared import do_entity_test
 
 logger = logging.getLogger(__name__)
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_wroc_no_tests():
     """\
     Test a Workflow RO-Crate with no test/ Dataset.
@@ -34,7 +36,7 @@ def test_wroc_no_tests():
         profile_identifier="workflow-ro-crate-linkml",
     )
 
-
+@pytest.mark.xfail(reason="not yet implemented")
 def test_wroc_no_examples():
     """\
     Test a Workflow RO-Crate with no examples/ Dataset.

tests/integration/profiles/workflow-ro-crate-linkml/test_wroc_descriptor.py

@@ -13,6 +13,7 @@
 # limitations under the License.
 
 import logging
+import pytest
 
 from rocrate_validator.models import Severity
 from tests.ro_crates import WROCInvalidConformsTo
@@ -22,6 +23,7 @@
 logger = logging.getLogger(__name__)
 
 
+@pytest.mark.xfail(reason="not yet implemented")
 def test_wroc_descriptor_bad_conforms_to():
     """\
     Test a Workflow RO-Crate where the metadata file descriptor does not

tests/integration/profiles/workflow-ro-crate-linkml/test_wroc_readme.py

@@ -13,6 +13,7 @@
 # limitations under the License.
 
 import logging
+import pytest
 
 from rocrate_validator.models import Severity
 from tests.ro_crates import WROCInvalidReadme
@@ -21,6 +22,7 @@
 logger = logging.getLogger(__name__)
 
 
+@pytest.mark.xfail(reason="not yet implemented")
 def test_wroc_readme_not_about_crate():
     """\
     Test a Workflow RO-Crate where the README.md is not about the crate.
@@ -35,6 +37,7 @@ def test_wroc_readme_not_about_crate():
     )
 
 
+@pytest.mark.xfail(reason="not yet implemented")
 def test_wroc_readme_wrong_encoding_format():
     """\
     Test a Workflow RO-Crate where the README.md has the wrong encodingFormat..

tests/integration/profiles/workflow-ro-crate-linkml/test_wroc_root_metadata.py

@@ -13,6 +13,7 @@
 # limitations under the License.
 
 import logging
+import re
 
 from rocrate_validator.models import Severity
 from tests.ro_crates import WROCNoLicense, WROCMainEntity
@@ -31,7 +32,9 @@ def test_wroc_no_license():
         False,
         ["WROC Root Data Entity Required Properties"],
         [
-            "The Crate (Root Data Entity) must specify a license, which should be a URL but can also be a string"
+            "Less than 1 values on <file://.//>-><http://schema.org/license>"
+            # TODO: return to message: "The Crate (Root Data Entity) must specify a license, which should be a URL but can also be a string"
+            # after https://github.com/linkml/linkml/issues/2417 is fixed
         ],
         profile_identifier="workflow-ro-crate-linkml",
     )
@@ -45,7 +48,7 @@ def test_wroc_no_mainentity():
         WROCMainEntity().wroc_no_mainentity,
         Severity.REQUIRED,
         False,
-        ["Main Workflow entity existence"],
+        ["WROC Root Data Entity Required Properties"],
         [
             "The Main Workflow must be specified through a `mainEntity` property in the root data entity"
         ],