Merge remote-tracking branch 'noaa/develop' into openaq

.codespell-exclude

@@ -35,3 +35,5 @@
     df = aeronet.add_data(dates, inv_type="ALM15", product="SIZ")
     df = aeronet.add_data(dates, inv_type="HYB15", product="SIZ")
     # https://aeronet.gsfc.nasa.gov/cgi-bin/print_web_data_inv_v3?site=Cart_Site&year=2002&month=6&day=1&year2=2003&month2=6&day2=14&product=SIZ&AVG=20&ALM15=1&if_no_html=1
+   "RIN",	"Refractive indices (real and imaginary)"
+        "RIN",

.github/workflows/ci.yml

@@ -44,7 +44,7 @@ jobs:
             attrs=22.2.0
 
       - name: Test with pytest
-        run: pytest -n auto -v
+        run: pytest -n auto -v -W "ignore:Downloading test file:UserWarning::"
 
       - name: Test with pytspack installed
         run: |

.github/workflows/lint.yml

@@ -14,10 +14,10 @@ jobs:
     if: github.repository == 'noaa-oar-arl/monetio'
     steps:
       - uses: actions/checkout@v4
-      - uses: actions/setup-python@v4
+      - uses: actions/setup-python@v5
         with:
           python-version: "3.9"
-      - uses: pre-commit/[email protected].0
+      - uses: pre-commit/[email protected].1
 
   cff:
     name: Validate CITATION.cff

.gitignore

@@ -4,7 +4,9 @@
 ._.DS_Store
 
 docs/api/
-
+tests/data/MOP*.he5
+tests/data/TROPOMI*.nc
+tests/data/OMPS-*.h5
 
 # Default GitHub .gitignore for Python below:
 

docs/conf.py

@@ -56,6 +56,7 @@
 # The name of the Pygments (syntax highlighting) style to use.
 pygments_style = "sphinx"
 
+linkcheck_retries = 3  # default is 1
 linkcheck_ignore = [
     "https://doi.org/10.1080/10473289.2005.10464718",
     "https://www.camx.com",

docs/installing.rst

@@ -55,5 +55,5 @@ or you can manually download it from GitHub and install it using the setup.py::
    always be available to python 2.7 users. For more information see the
    following references:
 
-      - `Python 3 Statement <https://python3statement.org/>`__
+      - `Python 3 Statement <https://python3statement.github.io/>`__
       - `Tips on porting to Python 3 <https://docs.python.org/3/howto/pyporting.html>`__

environment-dev.yml

@@ -15,16 +15,21 @@ dependencies:
   - xarray
   #
   # optional
+  - h5netcdf
+  - h5py
   - joblib
   - lxml
-  - pyhdf <0.11
+  - pyhdf!=0.11.3
+  - pyresample
   - requests
   - timezonefinder
   #
   # test
+  - filelock
   - pytest
   - pytest-xdist
   #
   - pip>=21.1
   - pip:
       - "-e ."
+      - pytest-print

monetio/__init__.py

@@ -14,10 +14,10 @@
     openaq_v2,
     pams,
 )
-from .profile import geoms, icartt, tolnet
+from .profile import geoms, gml_ozonesonde, icartt, tolnet
 from .sat import goes
 
-__version__ = "0.2.4"
+__version__ = "0.2.6"
 
 __all__ = [
     "__version__",
@@ -47,6 +47,7 @@
     #
     # profile obs
     "geoms",
+    "gml_ozonesonde",
     "icartt",
     "tolnet",
     #
@@ -59,6 +60,7 @@
     "fv3chem",
     "hysplit",
     "hytraj",
+    "icap_mme",
     "ncep_grib",
     "pardump",
     "prepchem",

monetio/models/__init__.py

@@ -1,4 +1,5 @@
 from . import (
+    _camx_mm,
     _cesm_fv_mm,
     _cesm_se_mm,
     _cmaq_mm,
@@ -9,13 +10,15 @@
     fv3chem,
     hysplit,
     hytraj,
+    icap_mme,
     ncep_grib,
     pardump,
     prepchem,
     raqms,
 )
 
 __all__ = [
+    "_camx_mm",
     "_cesm_se_mm",
     "_cesm_fv_mm",
     "_cmaq_mm",
@@ -26,9 +29,10 @@
     "fv3chem",
     "hysplit",
     "hytraj",
+    "icap_mme",
     "ncep_grib",
-    "prepchem",
     "pardump",
+    "prepchem",
     "raqms",
 ]