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Hajk-Georg Drost
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add and update docu
1 parent 3b17d81 commit 2d58a17

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‎docs/news/index.html

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‎docs/pkgdown.yml

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pkgdown: 2.0.7
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pkgdown_sha: ~
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articles: {}
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last_built: 2023-09-10T13:16Z
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last_built: 2023-09-10T15:01Z
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‎docs/reference/diamond_protein_to_protein_best_hits.html

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‎docs/reference/diamond_protein_to_protein_best_reciprocal_hits.html

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‎docs/reference/filter_best_hits.html

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‎docs/reference/index.html

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‎docs/sitemap.xml

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<url>
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<loc>/reference/diamond_protein_to_protein.html</loc>
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<url>
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<loc>/reference/diamond_protein_to_protein_best_hits.html</loc>
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</url>
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<url>
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<loc>/reference/diamond_protein_to_protein_best_reciprocal_hits.html</loc>
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</url>
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<url>
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<loc>/reference/file_contains_aa.html</loc>
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<loc>/reference/file_contains_dna.html</loc>
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<url>
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<loc>/reference/filter_best_hits.html</loc>
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</url>
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‎inst/seqs/ortho_lyra_aa.fasta

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>333554|PACid:16033839
2+
MEDLVGYGFRPTDDELVGYYLHNKILGKNWLVEGAINEVNICSFDPWNLRFQSKIKSRDPMWYFFSRRENKYTNGNRQSRTTDSGFWKVTGEPVDVKDQWGTWCTTPGKIGHKRVLVFLKGRISDKTKSDWVIHEFHDDLLPEHERTYVICRLEYKGNDKSILSANATDPTPTFVPNMTSSAGSVVNQSRQGNSASYNTYSEYDSANHGQQNFNMQLPVQGNLGSLNHFSEYDSANLGGNFDMQQPVEGYAGSFNLLPEYDLANHGGQWLSDYINLQQQVPYLAPYENESEMIWKSVVEENFESLIDERTSMQEHYSDYRPKKPVTGVLPDDSSDTETGSMIFEDTSSSTDSVGSSDEPCHTPIDDIQPLNTSKPSHNYEAQEQPNQLKLPYQNKEKVIYSQKSEYEWKMAEDSIKKPLSNNTVKQSRIVLEKRSQRNAQWNYLKNMIIGVLLFISIIGSIILVG*
3+
>470181|PACid:16064328
4+
MAASEHRCVGCGFRVKSLFIQYSPGNIRLMKCGNCKEVADEYIECERMIIFIDLILHRPKVYRHVLYNAINPETVNIQHLLWKLVFVYLLLDSYRSLLLRRTDEESSFSHSSVLISIKVLIGVLSANAAFIFSFAIAAKGLLNEVSRGREIMLGICISSYFKIFLLAMLVWEFPMSVIFIVDILVLTSNSMALKVMTESTMTRCIAVCLIAHLVRFSVGQIFEPTIFLTQFGSLMQYLSYLFRTV*
5+
>470180|PACid:16054974
6+
MDLSLAPTSSDQEQDRDQELTSNIRASSSSGPSGNNNNLPMMMIPPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFPLDSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGIGDESERSKLYIDWRHRPDMSLVQAHQFGNFGFNFNFPTTSQYSNRFHPLPEYKSVPIHRSLNIGNHQRSYYNNQRQEFVGYNYGNLAGRCYYTGSPLDQRNIVGSEPLVIDSVPVVPGRLTPVILPPLPPPPSTAGKRLRLFGVNMECGIDYNQQEESWLVPRGEMGASSSSSALRLNISTDHDDDTDDGDGGDDDQFAKKGKSSLSLNFNP*
7+
>333551|PACid:16057793
8+
MEPREDIIKPSYWLDACEDISCDLIDDLVSEFDPSSVAVNESTDDNGVINDFFGGIDHILDSIKNGGGLPNNGVSDTNEVSVTPQVIAKEVTVSVKENGLQKNGGTRDELSKEEGGKDRKRARVCSYQSERSNLSGRGQVNSRERDRFMNRKRTRNWDEAGNNKKRECYNYRRDGRDREGRGYWERDKVGSNELVFRSGTWEADHERGVKKESGRNRECDVKVEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKNTIAFLETGAGKTLIAILLIKSVHKDLMSKNRKLLSVFLVPKVPLVYQQAEVIRNQTCFQVGHYCGEMGQDFWDARRWQREFESKQVLVMTAQILLNILRHSIIRMETIDLLILDECHHAVKKHPYSLVMSEFYHTTPKDKRPAIFGMTASPVNLKGVSSQVDCAIKIRNLETKLDSTVCTIKDRKELEKHVPMPSEIVVEYDKAATMWSLHETIKQMIVAVEEAAQASSRKSKWQFMGARDAGAKDELRQVYGVSERTESDGAANLIHKLRAINYTLAELGQWCAYKVGQSFLTALQSDERVNFQVDVKFQESYLSEVVSLLQCELLEGAAAEKVAAEVSKTENGNANDEMEEGELPDDHVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKYQHTSDFRAIVFVERVVAALVLPKVFAELPSLGFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVAEEGLDIRQCNVVMRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNVSHAAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISIDTVPGTIYKVEATGAMVSLNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFEILEGPVCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEKVDQDDEGEPVPGTARHREFYPEGVADVLKGEWILSGKEICESSKLFHLYMYSVRCVDLGSSKDPFLTEVSEFAILFGNELDAEVLSMSMDLYVARAMITKASLAFKGSLDITENQLSSLKKFHVRLMSIVLDVDVEPSTTPWDPAKAYLFVPVSDNTSIEPIKGINWELVEKITKTTAWDNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHNIVFGQKSHPTYGIRGAVASFDVVRASGLLPVRDAFEKEVEEDLSKGKLMMADGCMVAEDLVGKIVTAAHSGKRFYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKEASTLLILYCYHEDFHGLNPPPVLCKNEKQSLSMYCEISTSMTRIYVQDRLFFFFLHNLRYGVDLNCKQQPLIKGRGVSYCKNLLSPRFEQSGESETILDKTYYVFLPPELCVVHPLSGSLVRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKILEALTAASCQETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEENSDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGGKVAANHLMKWIGIHVEDDPDEVEGTVKNVNVPESVLKSIDFVGLERALKFEFKEKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFVKEVQTESSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMVTPETLPMHPVRELQERCQQQAEGLEYKASRSGNTATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAALKEKEIAESKEKRVNGNAVENQDDENGNANKKNGNQTFTRQTLNDICLRKNWPMPSYRCVKEGGPAHAKRFTFGVRVNTSDRGWTDECIGEPMPSVKKAKDSAAVLLLQLLNKTYS*
9+
>909874|PACid:16064489
10+
MSEETKDNQRLQRPAPRLNERILSSLSRRSVAAHPWHDLEIGPGAPQIFNVVVEITKGSKVKYELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCEDNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHYTDIKELPPHRLSEIRRFFEDYKKNENKEVAVNDFLPSESAVEAIQYSMDLYAEYILHTLRR*
11+
>470177|PACid:16043374
12+
MDTNISGEELLAKARKPYTITKQRERWTDDEHERFLEALRLYGRAWQRIEEHIVTKTAVQIRSHAQKFFTKLEKEAEAKGIPVCQALDIEIPPPRPKRKPNTPYPRKHGNNGTSSSQVSSAKDAKLASSASSSQFNQSFLDLEKMPFSEKTSTGKENQDDNCSDVSTVNKYPLPKKKVSGDIETSKTSTVDNAVQDAPKKNKHKDGNDGTVYSVQNYLWHSHAGIVNGNIAKCPQNHPLGMVSQDFMFHPMREESHGHANLQATTASATASHQAFPACHSQNDYHSFLQMSSTFSNLIMSNLLQNPAAHAAATFAASVWPYANVGNSGDSSTPVSSSPPSIAAIAAATVAAATAWWASHGLLPVCAPAPITCVPLPTPAMTEMGTVENAQLPLEKQNTALQDQNVASKSLASSSDDSEETGVTKLNVDSKTQGDKVGEVVAAAAVHDSNTTQKKNMVDRSSCGSNTPSGSDAETDALDKMEKDKEDVKETDENQPDVIELNNRKIKMRDNNNNNNNPTTDSWKEVSEEGRIAFQALFAREKLPQSFSLPQVAENVNGKQRDTAMPLVPNFKSQDSCAADQERVVMIGVGPGKNLKTRQTGFKPYKRCSMELKESQVGNTNNQSDEKVCKRLRLEGEAST*
13+
>918864|PACid:16052578
14+
MGEGMIGVRVVEKYSPVIVMVMSNVAMGSVNALVKKALDVGVNHMVIGAYRMAISAFILVPFAYILERKTRPQITFRLMIDHFVSGLLGASLMQFFFLLGLSYTSATVSCALVSMLPAITFALALIFRTENVKILKTKAGMLKVIGTLICISGALFLTFYKGPQISNSHSHGEASHNKNDQDNANNWLLGCLYLTIGTVLLSLWMLFQGTLSIKYPCKYSSTCLMSIFAAFQCALLSLYKSRDVNDWIIDDRFVITVIIYAGVVGQAMSTVATTWGIKKLGAVFASAFFPLTLISATLFDFLILHTPLYLGSVIGSLVTITGLYMFLWGKNKETESSTALSSRMDNEAQNINKDNDSKSPV*
15+
>909871|PACid:16053217
16+
MAASCFAIPLSSSSRSSHNAIPKYKTLISSSYAYLESLKPQLSSSNSFHLSSLSRLFVAHQLQIKVSSSELSVLDEEEEEEVKGEGEVKTGEGETNGDSVVSEAEPVKKPRPCELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGARRNPEVLNSTPKKILMYESQYKVYVGNLPWFTQPDGLRDHFSKFGTIVSTRVLHDRKTGKNRVFAFLSFTNSEERDAALSLNGTQYEGRRIIVREGIEKSEA*
17+
>470171|PACid:16052860
18+
MATAFAPTKLTATVPLHGSQENRLLLPIRLAPLSSSSFLGSTRSLTVNSPRRLNHSNATRRSPVVAVQEVVKEKQSTNNSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVVSTYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPVATGAAFSSKYRREVLKQDCEDVTVAFFGDGTCNNGQFYECLNMAALYKLPIIFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHVDGMDVLKVREVAKEAVTRARRGEGPTLVECETYRFRGHSLADPDELRDAAEKAKYAARDPIVALKKYLIENKLAKEAELKSIEKKIDELVEEAVEFADASPQPGRSQLLENVFADPKGFGIGPDGRYRCEDPKFTEGTAQV*
19+
>333544|PACid:16034284
20+
MGKKNGSSSWLTAVKRAFRSPTKKDHNNDVEEDEEKKREKRRWFRKPSTQESPVKSSGISPPPPPQESVNANSQTSPETAPSYATTTPLSNAGNPPSAVVPIATSASKALAPRRIYYARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQYRVLDQRKRLSHDGSRKSAFSDSHAVYESRYLQEISDRQSMSREGSSAAEDWDDRPHTIDEVKAMLQRRRDTALRHEKTNLSQAFSQQMWRTVRNQSVGGDHEVELEEERPKWLDRWMATRPWDKRASSRASVDQRVSVKTVEIDASQPYSKTRTGSPSRIQRPSSPSRTSHHYQSRNNFSATPSPAQSRPIHIRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSFTARSGCSISTTMVNNASLLPNYMASTESAKARIRSQSAPRYRPSTPERDRAGLVKKRLSYPVPPPAEYEDNNSLRSPSFKSVAGSHFGGMLEQQSNYSSCCTESNGVEISPASTSDFRNWLR*
21+
>918858|PACid:16049140
22+
MERTNSIEMDRERLTAEMAFRDSSSAVIRIRRRLPDLLTSVKLKYVKLGLHNSCNLTTILFFLIILPLTGTVLVQLTGLTFDTFSELWSNQAVQLDTATRLTCLVFLCFVLTLYVANRTKPVYLVDFSCYKPEDERKISVDSFLTMTEENGSFTDDTVQFQQRISNRAGLGDETYLPRGITSKPPKLNMSEARAEAEAVMFGALDSLFEKTGIKPAEVGILIVNCSLFNPTPSLSAMIVNHYKMREDIKSYNLGGMGCSAGLISIDLANNLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQDRKKSKYSLVNVVRTHKGSDDKNYNCVYQKEDERGTIGVSLARELMSVAGDALKTNITTLGPMVLPLSEQLMFLISLVKRKMFKLKVKPYIPDFKLAFEHFCIHAGGRAVLDEVQKNLDLKDWHMEPSRMTLHRFGNTSSSSLWYEMAYTEAKGRVKAGDRLWQIAFGSGFKCNSAVWKALRPVSTEEMTGNAWAGSIDQYPVKVVQ*
23+
>470161|PACid:16036015
24+
MSGSRRKATTPASRTRVGNYEMGRTLGEGSFAKVKYARNTVTGDQAAIKILDREKVFRHKMVEQLKREISTMKLIKHPNVVEIIEVMASKTKIYIVLELVNGGELFDKIAQQGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLILDANGVLKVSDFGLSAFSRQVREDGLLHTACGTPNYVAPEVLSDKGYDGAAADVWSCGVILFVLMAGYLPFDEPNLMTLYKRICKAEFSCPPWFSLGAKRVIKRILEPNPITRISIAELLEDEWFKKGYKPPSFDQDDEDITIDDVDAAFSNSKECLVTEKKEKPVSMNAFELISSSSEFSLENLFEKQAQLVKKETRFTSQRSASEIMSKMEETAKPLGFNVRKDNYKIKMKGDKSGRKGQLSVATEVFEVAPSLHVVELRKTGGDTLEFHKVFDPFYKTFSSGLKDVVWNTEAAAEEQKQ*
25+
>918855|PACid:16037307
26+
MVRDIQDEIRVQKNPLPVDEDHIALLKSPYLGEIVEEISSVSEKLNAQCDDGGSDVNSAPNIFYFDHVPPKKRRYLGTSDTWRSFEPLNEDACVVCDITDDSVAPCSGNDCPISVHRECAELDCEDSATSYCPYCWFKDKATRSTTLRTVGVAAAKTLDQYRCTKLKSGDIAMARENNQLENDNDNSLSMQLHENLHQLREVVGQLKAQNFRFDETIVEKACGEACVDVDDQRKRVLWTAKEENMLRVGVEIFAATINKNIPWKKILEMGKGIFHKTRNSSDLKDKWRNMVRM*
27+
>918854|PACid:16044153
28+
MQQSPQMFPMVPSIPPTNNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADAQPPPPTQGAAPSPAMASQMTTPHPGMQPPSYFMQHPQASGMGQQASPAGLFPPRGPLQFGSPHQLQDPQQQQIHQQAMQGHMGIRPMGMNNNGMQHAMQQPDTGLGGNEEASKMEQMDKEKMMASERIQRSFVLLIFRTSESRKGFAIAYLSF*
29+
>311317|PACid:16052302
30+
MATASGGKAKYIIGALIGSFGISYIFDKVISDNKIFGGKNDLNGYLLVKPSGTTPGTVSNKEWWAATDEKFQAWPRTAGPPVVMNPISRQNFIVKTRPE*
31+
>909860|PACid:16056125
32+
MKEDRRLPHKRDAFQFLKTKTAYVIFIVLTYAFGYFSAYYSHQPLQQQQPPSPAAVRDVKTIKPQVCSIDNFRVTTRCGNLVPPELIRQTVIDRIFNGTSPYTDFPPPHAEKFLRPKRIKGWGSYGAVFENLIRRVKPRTIVEIGSFLGASAIHMANLTRRLGLEETQILCVDDFRGWPGFRDRFKDVALVNGDVLLMYQFMQNVVSSNVSGSILPVPFSTGSALEKLCEWGVTADLVEIDAGHDFNSAWADINRAVRILRPGGVIFGHDYFTAADNRGVRRAVNLFAEINRLKVKTDGQHWVIDSVKILLFKKI*
33+
>311315|PACid:16059488
34+
MLSLNMRTEIENLWVFALASKFNIFMQEHFASLLLAIAITWCTLTIVFWSTPGGPAWGKYFFTRRFSSLGHNRKSKNLIPGPRGFPLVGSMSLRSSHVAHQRIASVAEMSNAKRLMAFSLGDTKVVVTCHPDVAKEILNSSVFADRPVDETAYGLMFNRAMGFAPNGTYWRTLRRLSSNHLFNPKQIKRSEEQRRVIATQMVNAFARNAKSAFAVRDLLKTASLCNMMGLVFGREYELESNNNVESECLKGLVEEGYDLLGTLNWTDHLPWLAGLDFQQIRFRCSQLVPKVNLLLSRIIHEHYATGNFLDVLLSLQRSEKLSDSDIVAVLWEMIFRGTDTVAVLIEWVLARIALHPKVQSTVHDELDRVVGRSRTVDESDLPSLTYLTAMIKEVLRLHPPGPLLSWARLSITDTTVDGYHVPAGTTAMVNMWAIARDPHVWEDPLEFKPERFVAKDGEAEFSVFGSDLRLAPFGSGKRVCPGKNLGLTTVSFWVATLLHEFEWLPSVEANPPDLSEVLRLSCEMACPLIVNVSPRRKSV*
35+
>470156|PACid:16041002
36+
MNEEMSGESPENNKHVKEPTMPEKIDYVFKVVVIGDSAVGKTQLLSRFTQNEFCYDSKSTIGVEFQTRTVTLQGKLVKAQIWDTAGQERYRAVTSAYYRGALGAMVVYDITKRVSFDHVARWVEELRAHADDSAVIMLVGNKADLAVDKRAVPTEDAVEFAETQRLFFSEVSALSGGNVDEAFFRLLEEIFSRVVVSRKAMESDGGAPVKLDGSRIDVISGSDLEISKIKEQASCSC*
37+
>311313|PACid:16057125
38+
MEFCPTCGNLLRYEGSGNSRFFCSTCPYVAYVERQVEIKKKQLLVKKSIEPVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCLKCDFTWREE*
39+
>470155|PACid:16047984
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MSKQRKKADLATVLRKSWYHLRLSVRHPTRVPTWDAIVLTAASPEQAELYEWQLRRAKRMGRIASSTVTLAVPDPDGKRIGSGAATLNAIYALARHYEKLGFDPGPEVEVANGTCKWVRFLSAKHVLMLHAGGDSKRVPWANPMGKVFLPLPYLAADDPDGPVPLLFDHILAIASCARQAFRDQGGLFIMTGDVLPCFDAFRMTLPEDAASIVTVPITLDIASNHGVIVTSKSESLAESYTVSLVNDLLQKPTVEELVKKDAILHDGRTLLDTGIISAKGRAWLDLVALGCSCQPMILELISSKKEMSLYEDLVAAWVPSRHDWLRARPLGELLVNSLGRQKMYSYCTYDLQFLHFGTSSEVLDHLSGDASGIVGRRHLCSIPATTVSDIAASSVILSSEIAPGVSIGEDSLIYDSTVSGAVQIGSQSIVVGIHIPSEDLGTPERFRFMLPDRHCLWEVPLVGHKGRVIVYCGLHDNPKNSIHKDGTFCGKPLEKVLFDLGIEESDLWSSYVAQDRCLWNAKLFPILTYSEMLKLASWLMGLDDSRNKEKITLWRSSQRVSLEELHGSINFPEMCNGSSNHQADLAAGIAKACMNYGMLGRNFSQLCHEILQKESLGLEICKNFLDQCPKFQEQNSKILSKSRAYQVEVDLLRACGDEPKAIDLEHKVWGAVAEETASAVRYGFREHLLESSGKPHSENNISHPDRVFQPKRTKVELPVRVDFVGGWSDTPPWSLERAGCVLNMAITLEGSLPIGTIIETTNQIGISIQDDTGNELHIEDPISIKTPFEVNDPFRLVKSALLVTGIVQENFVDSTGLAIKTWANVPRGSGLGTSSILAAAVVTGLLQISDGDESNENVARLVLVLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGTPLRLQVVPLLASPQLISELEQRLLVVFTGQVRLAHQVLHKVVTRYLQRDNLLISSIKRLTELAKSGREALMNCEVDELGDIMSEAWRLHQELDPYCSNEFVDKLFAFSQPYSSGFKLVGAGGGGFALILAKDTEKGKELRQRLEEHAEFDVKVYNWSICI*

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