CITATION

The code and data in this github repository can be cited via this doi: https://doi.org/10.5281/zenodo.3903509


The results of the analysis are part of the following publication:

Cole, Christian, Karin Kroboth, Nicholas J. Schurch, Aileen Sandilands, Alexander Sherstnev, Grainne M. O’Regan, Rosemarie M. Watson, et al. ‘Filaggrin-Stratified Transcriptomic Analysis of Pediatric Skin Identifies Mechanistic Pathways in Patients with Atopic Dermatitis’. Journal of Allergy and Clinical Immunology, 134(1), 82-91 (2014). 
https://doi.org/10.1016/j.jaci.2014.04.021

Please cite both of the above when referencing this work.
Many thanks.

For the analysis performed on the RPTOR gene, please cite the following:

Naeem AS, Tommasi C, Cole C, Brown SJ, Zhu Y, Way B, Willis Owen SAG, Moffat M, Cookson WO, Harper JI, Di WL, Brown SJ, Reinheckel T & O'Shaughnessy RFL. 'A mechanistic target of rapamycin complex 1/2 (mTORC1)/V-Akt murine thymoma viral oncogene homolog 1 (AKT1)/cathepsin H axis controls filaggrin expression and processing in skin, a novel mechanism for skin barrier disruption in patients with atopic dermatitis' Journal of Allergy and Clinical Immunology, 139(4), 1228–1241 (2017).
https://doi.org/10.1016/j.jaci.2016.09.052