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index.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
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<meta name="viewport" content="width=device-width, initial-scale=1">
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<link rel="icon" href="../../favicon.ico">
<title>Dictystelid de novo Transcriptome Assembly</title>
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<a class="navbar-brand" href="#">Dictyostelid <i>de novo</i> assemblies</a>
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<h1>Dictyostelid Quickload Server</h1>
<p>The <i>de novo</i> transcriptome assembly data are made available here as an IGB Quickload server.</p>
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<div class="container">
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<div class="col-md-6">
<h2>Summary</h2>
<p>This landing page describes how to access data associated with the "<i>de novo</i> transcriptome assembly of four dictyostelid species" study published in BMC Genomics doi:<a href="http://dx.doi.org/10.1186/s12864-017-3505-0">10.1186/s12864-017-3505-0</a></p>
<p>The data have been made freely available as a Quickload server for easy browsing within <a href="http://bioviz.org/igb/index.html">Integrated Genome Browser</a> (IGB). See below for instructions in how to set it up.</p>
</div>
<div class="col-md-6">
<h2></h2>
<img src='image.png' width='500px' alt="Example IGB Image of Assembly Data">
</div>
</div> <!-- end row -->
<div class="row">
<div class="col-md-6">
<h2>Setting up</h2>
<p>Firstly, download and install <a href="http://bioviz.org/igb/index.html">Integrated Genome Browser</a> (IGB) locally</p>
<p>Then, set up a new data server in the Data Access panel as described in the <a href="https://wiki.transvar.org/display/igbman/Data+Access">manual</a>.</p>
<p><span class="label label-info">Info</span>Set the url as 'https://compbio.lifesci.dundee.ac.uk/Quickload/Dictyostelid_assemblies/'</p>
<p>Now, in the main window, choose one of the four species: <i>Dictyostelium discoideum, Dictyostelium fasciculatum, Dictyostelium lacteum</i> or <i>Polysphondylium pallidum</i> and our data should appear ready to use in the Data Access panel (see image detail boxed in red).</p>
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<div class="col-md-6">
<h2></h2>
<img src='igb_img.png' alt="IGB Data Access Panel">
</div>
</div>
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<strong><a href="http://www.compbio.dundee.ac.uk/index.html">Barton Group Home</a></strong>
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